Hb_005839_080

Information

Type -
Description -
Location Contig5839: 67540-69431
Sequence    

Annotation

kegg
ID tcc:TCM_017056
description Transcription factor bHLH61 isoform 1
nr
ID XP_007031706.1
description Transcription factor bHLH61 isoform 1 [Theobroma cacao]
swissprot
ID Q9LXA9
description Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1
trembl
ID A0A061EDZ5
description Transcription factor bHLH61 isoform 1 OS=Theobroma cacao GN=TCM_017056 PE=4 SV=1
Gene Ontology
ID GO:0016597
description transcription factor scream2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49904: 67543-69665
cDNA
(Sanger)
(ID:Location)		 004_G04.ab1: 67543-69602 , 047_N16.ab1: 67543-69566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_080 0.0 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
2 Hb_012084_010 0.1096098933 - - cold regulated protein [Manihot esculenta]
3 Hb_007632_200 0.1154160221 - - hypothetical protein L484_018221 [Morus notabilis]
4 Hb_000152_580 0.1217745818 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
5 Hb_022406_010 0.1279999825 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_003964_050 0.1290582014 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
7 Hb_088118_010 0.1308373887 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_000282_010 0.1327633786 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001102_030 0.1336871867 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_001606_040 0.1339738508 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
11 Hb_012633_010 0.1351177898 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
12 Hb_006519_020 0.1388069517 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_103709_010 0.1396563531 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_007225_010 0.1398207664 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
15 Hb_078954_020 0.1465901041 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_000816_080 0.1485270359 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
17 Hb_002079_100 0.1487086962 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
18 Hb_001218_060 0.1502160247 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004459_030 0.1510484267 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
20 Hb_089736_010 0.154247722 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]

Gene co-expression network

sample Hb_005839_080 Hb_005839_080 Hb_012084_010 Hb_012084_010 Hb_005839_080--Hb_012084_010 Hb_007632_200 Hb_007632_200 Hb_005839_080--Hb_007632_200 Hb_000152_580 Hb_000152_580 Hb_005839_080--Hb_000152_580 Hb_022406_010 Hb_022406_010 Hb_005839_080--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_005839_080--Hb_003964_050 Hb_088118_010 Hb_088118_010 Hb_005839_080--Hb_088118_010 Hb_103709_010 Hb_103709_010 Hb_012084_010--Hb_103709_010 Hb_001606_040 Hb_001606_040 Hb_012084_010--Hb_001606_040 Hb_012084_010--Hb_022406_010 Hb_012084_010--Hb_003964_050 Hb_001218_060 Hb_001218_060 Hb_012084_010--Hb_001218_060 Hb_001040_050 Hb_001040_050 Hb_007632_200--Hb_001040_050 Hb_004650_040 Hb_004650_040 Hb_007632_200--Hb_004650_040 Hb_012633_010 Hb_012633_010 Hb_007632_200--Hb_012633_010 Hb_006519_020 Hb_006519_020 Hb_007632_200--Hb_006519_020 Hb_001102_030 Hb_001102_030 Hb_007632_200--Hb_001102_030 Hb_001677_070 Hb_001677_070 Hb_000152_580--Hb_001677_070 Hb_000152_580--Hb_001102_030 Hb_000465_110 Hb_000465_110 Hb_000152_580--Hb_000465_110 Hb_001921_040 Hb_001921_040 Hb_000152_580--Hb_001921_040 Hb_000556_050 Hb_000556_050 Hb_000152_580--Hb_000556_050 Hb_149985_030 Hb_149985_030 Hb_022406_010--Hb_149985_030 Hb_022406_010--Hb_001606_040 Hb_022406_010--Hb_006519_020 Hb_169753_010 Hb_169753_010 Hb_022406_010--Hb_169753_010 Hb_005695_070 Hb_005695_070 Hb_022406_010--Hb_005695_070 Hb_008059_040 Hb_008059_040 Hb_003964_050--Hb_008059_040 Hb_003964_050--Hb_012633_010 Hb_078954_020 Hb_078954_020 Hb_003964_050--Hb_078954_020 Hb_003964_050--Hb_103709_010 Hb_089736_010 Hb_089736_010 Hb_088118_010--Hb_089736_010 Hb_000816_080 Hb_000816_080 Hb_088118_010--Hb_000816_080 Hb_054615_010 Hb_054615_010 Hb_088118_010--Hb_054615_010 Hb_001926_010 Hb_001926_010 Hb_088118_010--Hb_001926_010 Hb_088118_010--Hb_001921_040 Hb_004007_080 Hb_004007_080 Hb_088118_010--Hb_004007_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224153 3.73248 116.743 7.26339 0.0350709 0.0506407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.04022 9.48004

CAGE analysis