Hb_008059_040

Information

Type -
Description -
Location Contig8059: 66666-67586
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12360g
description POPTRDRAFT_574380; hypothetical protein
nr
ID XP_002326040.2
description hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
swissprot
ID P27054
description Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1
trembl
ID B9IQS8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12360g PE=4 SV=2
Gene Ontology
ID GO:0004568
description endochitinase pr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008059_040 0.0 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
2 Hb_103709_010 0.1085902829 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_012084_010 0.1122682178 - - cold regulated protein [Manihot esculenta]
4 Hb_003964_050 0.1149185178 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
5 Hb_001218_060 0.1379972834 - - conserved hypothetical protein [Ricinus communis]
6 Hb_078954_020 0.1456879753 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
7 Hb_005839_080 0.157008644 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
8 Hb_012633_010 0.1571868114 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
9 Hb_000282_010 0.1594717902 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001606_040 0.1690533673 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
11 Hb_005511_080 0.1696098356 - - Protein MLO, putative [Ricinus communis]
12 Hb_000280_100 0.1755491601 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
13 Hb_022406_010 0.1788375707 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_149985_030 0.1820788299 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
15 Hb_001123_340 0.1840776405 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
16 Hb_000668_100 0.1844936097 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
17 Hb_007632_200 0.1875071587 - - hypothetical protein L484_018221 [Morus notabilis]
18 Hb_003077_010 0.1893871609 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001143_200 0.1898067478 transcription factor TF Family: NAC NAC domain protein [Glycine max]
20 Hb_065256_010 0.1922278715 - - tryptophan synthase beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_008059_040 Hb_008059_040 Hb_103709_010 Hb_103709_010 Hb_008059_040--Hb_103709_010 Hb_012084_010 Hb_012084_010 Hb_008059_040--Hb_012084_010 Hb_003964_050 Hb_003964_050 Hb_008059_040--Hb_003964_050 Hb_001218_060 Hb_001218_060 Hb_008059_040--Hb_001218_060 Hb_078954_020 Hb_078954_020 Hb_008059_040--Hb_078954_020 Hb_005839_080 Hb_005839_080 Hb_008059_040--Hb_005839_080 Hb_103709_010--Hb_012084_010 Hb_149985_030 Hb_149985_030 Hb_103709_010--Hb_149985_030 Hb_022406_010 Hb_022406_010 Hb_103709_010--Hb_022406_010 Hb_103709_010--Hb_001218_060 Hb_001606_040 Hb_001606_040 Hb_103709_010--Hb_001606_040 Hb_012084_010--Hb_001606_040 Hb_012084_010--Hb_022406_010 Hb_012084_010--Hb_003964_050 Hb_012084_010--Hb_001218_060 Hb_012084_010--Hb_005839_080 Hb_012633_010 Hb_012633_010 Hb_003964_050--Hb_012633_010 Hb_003964_050--Hb_005839_080 Hb_003964_050--Hb_078954_020 Hb_003964_050--Hb_103709_010 Hb_000282_010 Hb_000282_010 Hb_001218_060--Hb_000282_010 Hb_001123_340 Hb_001123_340 Hb_001218_060--Hb_001123_340 Hb_001218_060--Hb_078954_020 Hb_005511_080 Hb_005511_080 Hb_001218_060--Hb_005511_080 Hb_003077_010 Hb_003077_010 Hb_001218_060--Hb_003077_010 Hb_078954_020--Hb_000282_010 Hb_078954_020--Hb_001123_340 Hb_001926_010 Hb_001926_010 Hb_078954_020--Hb_001926_010 Hb_000152_200 Hb_000152_200 Hb_078954_020--Hb_000152_200 Hb_063584_010 Hb_063584_010 Hb_078954_020--Hb_063584_010 Hb_007632_200 Hb_007632_200 Hb_005839_080--Hb_007632_200 Hb_000152_580 Hb_000152_580 Hb_005839_080--Hb_000152_580 Hb_005839_080--Hb_022406_010 Hb_088118_010 Hb_088118_010 Hb_005839_080--Hb_088118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0281834 15.1627 172.6 3.26652 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.971992 0.713352 0 2.78136 18.5689

CAGE analysis