Hb_003077_010

Information

Type -
Description -
Location Contig3077: 10849-13492
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04100g
description POPTRDRAFT_654643; hypothetical protein
nr
ID XP_012065470.1
description PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9S829
description NAD(P)H-quinone oxidoreductase subunit O, chloroplastic OS=Arabidopsis thaliana GN=ndhO PE=2 SV=1
trembl
ID A0A067LHK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24142 PE=4 SV=1
Gene Ontology
ID GO:0005886
description nad h:plastoquinone dehydrogenase complex subunit o isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32488: 10807-13463
cDNA
(Sanger)
(ID:Location)		 006_I06.ab1: 10807-13463 , 015_M14.ab1: 10807-13463 , 023_D07.ab1: 10807-13463 , 035_D11.ab1: 10810-13474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_010 0.0 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001606_040 0.0955230039 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
3 Hb_001123_340 0.0994935563 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
4 Hb_104014_010 0.1047577348 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
5 Hb_089736_010 0.1055153372 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
6 Hb_001218_060 0.1058564991 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002121_030 0.1068135933 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
8 Hb_000152_650 0.1080646719 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_000264_160 0.1091159837 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
10 Hb_054615_010 0.1104437697 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
11 Hb_088118_010 0.1157971041 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_002918_170 0.1170273333 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
13 Hb_012084_010 0.1186031248 - - cold regulated protein [Manihot esculenta]
14 Hb_165330_010 0.1186426754 - - BnaUnng00840D [Brassica napus]
15 Hb_000431_080 0.1188622706 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
16 Hb_000494_010 0.1228485795 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
17 Hb_000051_150 0.1228828869 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
18 Hb_022406_010 0.1233487457 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000282_010 0.1242083796 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000809_220 0.1281910869 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]

Gene co-expression network

sample Hb_003077_010 Hb_003077_010 Hb_001606_040 Hb_001606_040 Hb_003077_010--Hb_001606_040 Hb_001123_340 Hb_001123_340 Hb_003077_010--Hb_001123_340 Hb_104014_010 Hb_104014_010 Hb_003077_010--Hb_104014_010 Hb_089736_010 Hb_089736_010 Hb_003077_010--Hb_089736_010 Hb_001218_060 Hb_001218_060 Hb_003077_010--Hb_001218_060 Hb_002121_030 Hb_002121_030 Hb_003077_010--Hb_002121_030 Hb_022406_010 Hb_022406_010 Hb_001606_040--Hb_022406_010 Hb_006519_020 Hb_006519_020 Hb_001606_040--Hb_006519_020 Hb_149985_030 Hb_149985_030 Hb_001606_040--Hb_149985_030 Hb_012084_010 Hb_012084_010 Hb_001606_040--Hb_012084_010 Hb_088118_010 Hb_088118_010 Hb_001606_040--Hb_088118_010 Hb_001123_340--Hb_001218_060 Hb_000282_010 Hb_000282_010 Hb_001123_340--Hb_000282_010 Hb_001926_010 Hb_001926_010 Hb_001123_340--Hb_001926_010 Hb_001123_340--Hb_089736_010 Hb_000187_100 Hb_000187_100 Hb_001123_340--Hb_000187_100 Hb_000264_160 Hb_000264_160 Hb_001123_340--Hb_000264_160 Hb_000051_150 Hb_000051_150 Hb_104014_010--Hb_000051_150 Hb_001913_070 Hb_001913_070 Hb_104014_010--Hb_001913_070 Hb_000152_650 Hb_000152_650 Hb_104014_010--Hb_000152_650 Hb_010422_020 Hb_010422_020 Hb_104014_010--Hb_010422_020 Hb_001369_590 Hb_001369_590 Hb_104014_010--Hb_001369_590 Hb_005365_040 Hb_005365_040 Hb_104014_010--Hb_005365_040 Hb_054615_010 Hb_054615_010 Hb_089736_010--Hb_054615_010 Hb_089736_010--Hb_088118_010 Hb_074240_030 Hb_074240_030 Hb_089736_010--Hb_074240_030 Hb_089736_010--Hb_001926_010 Hb_003387_010 Hb_003387_010 Hb_089736_010--Hb_003387_010 Hb_001218_060--Hb_000282_010 Hb_078954_020 Hb_078954_020 Hb_001218_060--Hb_078954_020 Hb_005511_080 Hb_005511_080 Hb_001218_060--Hb_005511_080 Hb_001218_060--Hb_012084_010 Hb_002121_030--Hb_001369_590 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_002121_030--Hb_000152_650 Hb_002121_030--Hb_054615_010 Hb_002121_030--Hb_005365_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04229 8.80114 143.526 16.9304 0.637221 0.699396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0592491 0 1.58763 26.0558

CAGE analysis