Hb_000465_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig465: 68403-69221
Sequence    

Annotation

kegg
ID vvi:104878347
description transcription factor WER-like
nr
ID XP_012070024.1
description PREDICTED: myb-related protein 330-like [Jatropha curcas]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A067KUK8
description MYB family protein OS=Jatropha curcas GN=JCGZ_03427 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_110 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
2 Hb_019762_030 0.0873930307 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
3 Hb_000853_340 0.0896410245 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
4 Hb_002235_260 0.0975594349 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
5 Hb_001921_040 0.099234779 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
6 Hb_004117_060 0.1022524044 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
7 Hb_000173_330 0.1027234684 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
8 Hb_155874_020 0.1032707004 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
9 Hb_006649_100 0.104403194 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_005198_010 0.1090746726 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
11 Hb_003702_010 0.1099868883 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
12 Hb_008195_100 0.1111544998 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
13 Hb_063584_010 0.1124680491 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
14 Hb_031862_190 0.1148097201 - - -
15 Hb_001926_010 0.1170846204 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
16 Hb_009293_030 0.1183929782 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
17 Hb_000556_050 0.1184143389 - - -
18 Hb_000023_170 0.1187217242 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
19 Hb_132840_060 0.1200691496 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
20 Hb_017358_060 0.1218609007 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_110 Hb_000465_110 Hb_019762_030 Hb_019762_030 Hb_000465_110--Hb_019762_030 Hb_000853_340 Hb_000853_340 Hb_000465_110--Hb_000853_340 Hb_002235_260 Hb_002235_260 Hb_000465_110--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_000465_110--Hb_001921_040 Hb_004117_060 Hb_004117_060 Hb_000465_110--Hb_004117_060 Hb_000173_330 Hb_000173_330 Hb_000465_110--Hb_000173_330 Hb_019762_030--Hb_000853_340 Hb_005198_010 Hb_005198_010 Hb_019762_030--Hb_005198_010 Hb_019762_030--Hb_002235_260 Hb_019762_030--Hb_004117_060 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_000853_340--Hb_155874_020 Hb_000853_340--Hb_003702_010 Hb_008195_100 Hb_008195_100 Hb_000853_340--Hb_008195_100 Hb_000023_170 Hb_000023_170 Hb_000853_340--Hb_000023_170 Hb_132840_060 Hb_132840_060 Hb_000853_340--Hb_132840_060 Hb_002235_260--Hb_004117_060 Hb_002235_260--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_002235_260--Hb_008165_010 Hb_000023_030 Hb_000023_030 Hb_002235_260--Hb_000023_030 Hb_002235_260--Hb_005198_010 Hb_001921_040--Hb_004117_060 Hb_001926_010 Hb_001926_010 Hb_001921_040--Hb_001926_010 Hb_000243_180 Hb_000243_180 Hb_001921_040--Hb_000243_180 Hb_001921_040--Hb_005198_010 Hb_003226_040 Hb_003226_040 Hb_001921_040--Hb_003226_040 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_008165_010 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020 Hb_000173_330--Hb_003702_010 Hb_000173_330--Hb_000853_340 Hb_000173_330--Hb_155874_020 Hb_000173_330--Hb_000023_170 Hb_000173_330--Hb_008195_100 Hb_009189_090 Hb_009189_090 Hb_000173_330--Hb_009189_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.189 0.864421 0.0856623 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127228 1.95758

CAGE analysis