Hb_000035_140

Information

Type transcription factor
Description TF Family: WRKY
Location Contig35: 202535-204638
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02470g
description POPTRDRAFT_669155; hypothetical protein
nr
ID XP_002324327.1
description putative WRKY transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9SAH7
description Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1
trembl
ID B9IL50
description Putative WRKY transcription factor family protein OS=Populus trichocarpa GN=POPTR_0018s02470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36405: 202810-204881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_140 0.0 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
2 Hb_115962_010 0.0947075849 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_001660_080 0.0962470545 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
4 Hb_189208_060 0.1105708876 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
5 Hb_001160_050 0.1210638422 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
6 Hb_004551_010 0.1219061013 - - tryptophan synthase beta chain, putative [Ricinus communis]
7 Hb_012496_020 0.1251254017 - - receptor serine/threonine kinase, putative [Ricinus communis]
8 Hb_000140_250 0.1260895283 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
9 Hb_000438_200 0.1299134328 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
10 Hb_026016_010 0.1307912849 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_140000_010 0.1326843459 - - receptor-kinase, putative [Ricinus communis]
12 Hb_011794_050 0.13283029 - - transcription factor, putative [Ricinus communis]
13 Hb_018633_010 0.1330412643 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_000134_260 0.1341189447 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_001001_010 0.1355537159 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
16 Hb_005599_020 0.1374243132 - - Protein MLO, putative [Ricinus communis]
17 Hb_000836_420 0.1375150643 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000111_240 0.1415997227 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
19 Hb_077694_010 0.1416212342 - - uncharacterized protein LOC100305624 [Glycine max]
20 Hb_005695_070 0.1441504208 - - Cysteine-rich RLK 29 [Theobroma cacao]

Gene co-expression network

sample Hb_000035_140 Hb_000035_140 Hb_115962_010 Hb_115962_010 Hb_000035_140--Hb_115962_010 Hb_001660_080 Hb_001660_080 Hb_000035_140--Hb_001660_080 Hb_189208_060 Hb_189208_060 Hb_000035_140--Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_000035_140--Hb_001160_050 Hb_004551_010 Hb_004551_010 Hb_000035_140--Hb_004551_010 Hb_012496_020 Hb_012496_020 Hb_000035_140--Hb_012496_020 Hb_000438_200 Hb_000438_200 Hb_115962_010--Hb_000438_200 Hb_000049_030 Hb_000049_030 Hb_115962_010--Hb_000049_030 Hb_115962_010--Hb_012496_020 Hb_009421_090 Hb_009421_090 Hb_115962_010--Hb_009421_090 Hb_001025_140 Hb_001025_140 Hb_115962_010--Hb_001025_140 Hb_005381_010 Hb_005381_010 Hb_001660_080--Hb_005381_010 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_121540_010 Hb_121540_010 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_001660_080--Hb_189208_060 Hb_189208_060--Hb_001160_050 Hb_002374_030 Hb_002374_030 Hb_189208_060--Hb_002374_030 Hb_189208_060--Hb_000836_420 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_000152_410 Hb_000152_410 Hb_189208_060--Hb_000152_410 Hb_001160_050--Hb_000836_420 Hb_001160_050--Hb_002374_030 Hb_000878_090 Hb_000878_090 Hb_001160_050--Hb_000878_090 Hb_009907_020 Hb_009907_020 Hb_001160_050--Hb_009907_020 Hb_001160_050--Hb_000152_410 Hb_031266_020 Hb_031266_020 Hb_004551_010--Hb_031266_020 Hb_000134_260 Hb_000134_260 Hb_004551_010--Hb_000134_260 Hb_009252_090 Hb_009252_090 Hb_004551_010--Hb_009252_090 Hb_004551_010--Hb_001660_080 Hb_002374_200 Hb_002374_200 Hb_004551_010--Hb_002374_200 Hb_186995_010 Hb_186995_010 Hb_012496_020--Hb_186995_010 Hb_167206_010 Hb_167206_010 Hb_012496_020--Hb_167206_010 Hb_012496_020--Hb_000438_200 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_012496_020--Hb_005381_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 87.8956 186.013 41.5942 0.014002 0.0421284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0955199 0.0751473 0.0940632 5.02047 33.9861

CAGE analysis