Hb_001025_140

Information

Type -
Description -
Location Contig1025: 122605-129839
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09180g
description POPTRDRAFT_776123; hypothetical protein
nr
ID XP_002322180.1
description hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
swissprot
ID Q9M0N1
description Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1
trembl
ID B9IEV2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09180g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01093: 122955-123148 , PASA_asmbl_01094: 123586-123739 , PASA_asmbl_01095: 123896-124601 , PASA_asmbl_01096: 123896-128026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_140 0.0 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
2 Hb_004223_080 0.1045781703 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000438_200 0.1070131857 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
4 Hb_000059_030 0.1103619876 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
5 Hb_115962_010 0.1122158985 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_001638_120 0.1213413715 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
7 Hb_000049_030 0.1242779958 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000392_170 0.1282217848 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
9 Hb_018563_010 0.1397613266 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_011918_030 0.1430603606 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
11 Hb_004316_020 0.1467591211 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
12 Hb_009421_090 0.1472675168 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
13 Hb_000809_130 0.1476135111 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
14 Hb_000856_230 0.1494985021 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
15 Hb_000134_260 0.1510116886 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_000002_370 0.1518767136 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
17 Hb_004712_090 0.1528152096 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
18 Hb_059318_010 0.1528900095 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_189208_060 0.1530645292 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
20 Hb_011794_050 0.1537131089 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001025_140 Hb_001025_140 Hb_004223_080 Hb_004223_080 Hb_001025_140--Hb_004223_080 Hb_000438_200 Hb_000438_200 Hb_001025_140--Hb_000438_200 Hb_000059_030 Hb_000059_030 Hb_001025_140--Hb_000059_030 Hb_115962_010 Hb_115962_010 Hb_001025_140--Hb_115962_010 Hb_001638_120 Hb_001638_120 Hb_001025_140--Hb_001638_120 Hb_000049_030 Hb_000049_030 Hb_001025_140--Hb_000049_030 Hb_000809_130 Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_000392_170 Hb_000392_170 Hb_004223_080--Hb_000392_170 Hb_000349_250 Hb_000349_250 Hb_004223_080--Hb_000349_250 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_000438_200--Hb_115962_010 Hb_018563_010 Hb_018563_010 Hb_000438_200--Hb_018563_010 Hb_000438_200--Hb_000049_030 Hb_012496_020 Hb_012496_020 Hb_000438_200--Hb_012496_020 Hb_167206_010 Hb_167206_010 Hb_000438_200--Hb_167206_010 Hb_000059_030--Hb_000392_170 Hb_000059_030--Hb_000438_200 Hb_000856_230 Hb_000856_230 Hb_000059_030--Hb_000856_230 Hb_000059_030--Hb_115962_010 Hb_009421_090 Hb_009421_090 Hb_000059_030--Hb_009421_090 Hb_115962_010--Hb_000049_030 Hb_000035_140 Hb_000035_140 Hb_115962_010--Hb_000035_140 Hb_115962_010--Hb_012496_020 Hb_115962_010--Hb_009421_090 Hb_011918_030 Hb_011918_030 Hb_001638_120--Hb_011918_030 Hb_001638_120--Hb_004223_080 Hb_003688_220 Hb_003688_220 Hb_001638_120--Hb_003688_220 Hb_000134_260 Hb_000134_260 Hb_001638_120--Hb_000134_260 Hb_107078_010 Hb_107078_010 Hb_001638_120--Hb_107078_010 Hb_059429_010 Hb_059429_010 Hb_000049_030--Hb_059429_010 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_001983_040 Hb_001983_040 Hb_000049_030--Hb_001983_040 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0340167 0.926851 2.68426 1.00639 0.0670838 0.014941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0244546 0.506711

CAGE analysis