Hb_001307_020

Information

Type -
Description -
Location Contig1307: 5835-8608
Sequence    

Annotation

kegg
ID rcu:RCOM_0258730
description electron carrier, putative
nr
ID XP_002529832.1
description electron carrier, putative [Ricinus communis]
swissprot
ID B5WWZ9
description Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1
trembl
ID B9SV13
description Long-chain-alcohol oxidase OS=Ricinus communis GN=RCOM_0258730 PE=3 SV=1
Gene Ontology
ID GO:0016020
description long-chain-alcohol oxidase fao2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09085: 5832-7257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_020 0.0 - - electron carrier, putative [Ricinus communis]
2 Hb_004223_080 0.1083460145 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_001541_190 0.1096909856 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
4 Hb_000027_160 0.112589345 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
5 Hb_001828_110 0.1170830511 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
6 Hb_000905_100 0.1175405388 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
7 Hb_000809_130 0.1215466119 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
8 Hb_000914_140 0.1271115502 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
9 Hb_024714_090 0.1272728371 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
10 Hb_003573_050 0.1306904199 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_002639_050 0.1314113715 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_001633_160 0.132439395 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
13 Hb_033006_020 0.132969714 - - Aspartate aminotransferase, putative [Ricinus communis]
14 Hb_000836_090 0.1330140047 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
15 Hb_002053_180 0.1340360672 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
16 Hb_001085_160 0.1364059872 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_000103_370 0.1416107651 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
18 Hb_071674_010 0.141663313 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
19 Hb_000567_330 0.1426115982 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
20 Hb_000956_050 0.1428102818 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_020 Hb_001307_020 Hb_004223_080 Hb_004223_080 Hb_001307_020--Hb_004223_080 Hb_001541_190 Hb_001541_190 Hb_001307_020--Hb_001541_190 Hb_000027_160 Hb_000027_160 Hb_001307_020--Hb_000027_160 Hb_001828_110 Hb_001828_110 Hb_001307_020--Hb_001828_110 Hb_000905_100 Hb_000905_100 Hb_001307_020--Hb_000905_100 Hb_000809_130 Hb_000809_130 Hb_001307_020--Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_001025_140 Hb_001025_140 Hb_004223_080--Hb_001025_140 Hb_000392_170 Hb_000392_170 Hb_004223_080--Hb_000392_170 Hb_000349_250 Hb_000349_250 Hb_004223_080--Hb_000349_250 Hb_000069_300 Hb_000069_300 Hb_001541_190--Hb_000069_300 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070 Hb_000027_160--Hb_000349_250 Hb_024714_090 Hb_024714_090 Hb_000027_160--Hb_024714_090 Hb_002053_180 Hb_002053_180 Hb_000027_160--Hb_002053_180 Hb_001571_080 Hb_001571_080 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000027_160--Hb_000905_100 Hb_003573_050 Hb_003573_050 Hb_001828_110--Hb_003573_050 Hb_003747_250 Hb_003747_250 Hb_001828_110--Hb_003747_250 Hb_000914_140 Hb_000914_140 Hb_001828_110--Hb_000914_140 Hb_000527_050 Hb_000527_050 Hb_001828_110--Hb_000527_050 Hb_000300_190 Hb_000300_190 Hb_001828_110--Hb_000300_190 Hb_000836_090 Hb_000836_090 Hb_000905_100--Hb_000836_090 Hb_000905_100--Hb_000809_130 Hb_000905_100--Hb_000002_370 Hb_000905_100--Hb_002053_180 Hb_033006_020 Hb_033006_020 Hb_000905_100--Hb_033006_020 Hb_000103_370 Hb_000103_370 Hb_000809_130--Hb_000103_370 Hb_006196_030 Hb_006196_030 Hb_000809_130--Hb_006196_030 Hb_000809_130--Hb_000002_370 Hb_002301_400 Hb_002301_400 Hb_000809_130--Hb_002301_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0492981 1.54571 5.23363 3.22633 0.0843576 0.0189514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224068 0.158673 0.100316 0.371726 1.11799

CAGE analysis