Hb_003573_050

Information

Type -
Description -
Location Contig3573: 42287-43270
Sequence    

Annotation

kegg
ID rcu:RCOM_0566700
description ARF GTPase activator, putative
nr
ID XP_002530486.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q8LFN9
description Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1
trembl
ID B9SWW7
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_0566700 PE=4 SV=1
Gene Ontology
ID GO:0016874
description probable adp-ribosylation factor gtpase-activating protein agd11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36853: 42299-43420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003573_050 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_001828_110 0.0505101568 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
3 Hb_000914_140 0.0896607458 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
4 Hb_002817_030 0.1091315697 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
5 Hb_000418_170 0.1115462332 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
6 Hb_003747_250 0.1170808559 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
7 Hb_002490_060 0.1195052263 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
8 Hb_000627_040 0.1207879146 - - leucine-rich repeat protein, putative [Ricinus communis]
9 Hb_000010_440 0.125154152 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
10 Hb_000365_430 0.1253278174 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
11 Hb_002053_180 0.1273287327 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
12 Hb_007237_020 0.1274566036 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
13 Hb_000862_050 0.1284581004 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
14 Hb_000024_150 0.128772012 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
15 Hb_007101_040 0.1292521947 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
16 Hb_001366_290 0.1297790421 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
17 Hb_000735_060 0.12995036 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
18 Hb_001307_020 0.1306904199 - - electron carrier, putative [Ricinus communis]
19 Hb_000996_040 0.1311314618 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
20 Hb_022092_110 0.1337351296 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]

Gene co-expression network

sample Hb_003573_050 Hb_003573_050 Hb_001828_110 Hb_001828_110 Hb_003573_050--Hb_001828_110 Hb_000914_140 Hb_000914_140 Hb_003573_050--Hb_000914_140 Hb_002817_030 Hb_002817_030 Hb_003573_050--Hb_002817_030 Hb_000418_170 Hb_000418_170 Hb_003573_050--Hb_000418_170 Hb_003747_250 Hb_003747_250 Hb_003573_050--Hb_003747_250 Hb_002490_060 Hb_002490_060 Hb_003573_050--Hb_002490_060 Hb_001828_110--Hb_003747_250 Hb_001828_110--Hb_000914_140 Hb_000527_050 Hb_000527_050 Hb_001828_110--Hb_000527_050 Hb_001307_020 Hb_001307_020 Hb_001828_110--Hb_001307_020 Hb_000300_190 Hb_000300_190 Hb_001828_110--Hb_000300_190 Hb_000914_140--Hb_002817_030 Hb_002311_500 Hb_002311_500 Hb_000914_140--Hb_002311_500 Hb_002053_180 Hb_002053_180 Hb_000914_140--Hb_002053_180 Hb_003759_040 Hb_003759_040 Hb_000914_140--Hb_003759_040 Hb_007237_020 Hb_007237_020 Hb_002817_030--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_002817_030--Hb_027337_010 Hb_004117_280 Hb_004117_280 Hb_002817_030--Hb_004117_280 Hb_002817_030--Hb_002311_500 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_022092_110 Hb_022092_110 Hb_000418_170--Hb_022092_110 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_001936_180 Hb_001936_180 Hb_000418_170--Hb_001936_180 Hb_005675_050 Hb_005675_050 Hb_000418_170--Hb_005675_050 Hb_021065_010 Hb_021065_010 Hb_000418_170--Hb_021065_010 Hb_006120_210 Hb_006120_210 Hb_003747_250--Hb_006120_210 Hb_008749_010 Hb_008749_010 Hb_003747_250--Hb_008749_010 Hb_000742_130 Hb_000742_130 Hb_003747_250--Hb_000742_130 Hb_008806_040 Hb_008806_040 Hb_003747_250--Hb_008806_040 Hb_004228_070 Hb_004228_070 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_002490_060--Hb_000627_040 Hb_006922_020 Hb_006922_020 Hb_002490_060--Hb_006922_020 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_002490_060--Hb_007237_020 Hb_007123_010 Hb_007123_010 Hb_002490_060--Hb_007123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322152 9.73987 36.9251 28.0084 0.0949591 0.0285316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297042 0.175155 0.839069 7.27408 9.1894

CAGE analysis