Hb_000527_050

Information

Type -
Description -
Location Contig527: 58276-58548
Sequence    

Annotation

kegg
ID rcu:RCOM_1062440
description hypothetical protein
nr
ID XP_002521406.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5Y7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_J07.ab1: 58239-58943

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010381_100 0.1110173056 - - Phospholipase D epsilon [Morus notabilis]
3 Hb_021065_010 0.1119464071 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
4 Hb_001828_110 0.1151327025 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
5 Hb_001157_050 0.1236875358 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
6 Hb_000418_170 0.1334117408 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
7 Hb_001366_290 0.133912475 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
8 Hb_003573_050 0.1352493009 - - ARF GTPase activator, putative [Ricinus communis]
9 Hb_000003_750 0.1352702366 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
10 Hb_001159_090 0.1383688227 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
11 Hb_010690_010 0.1386158523 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
12 Hb_006196_030 0.1428845412 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
13 Hb_001247_150 0.1429215755 - - hypothetical protein JCGZ_23179 [Jatropha curcas]
14 Hb_007123_010 0.1453413856 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
15 Hb_000375_260 0.1487697773 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
16 Hb_006922_020 0.1492484467 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
17 Hb_005675_050 0.1495095743 - - alpha-glucosidase, putative [Ricinus communis]
18 Hb_015048_020 0.1506897233 - - PREDICTED: myb-like protein D [Jatropha curcas]
19 Hb_021576_130 0.1514815106 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
20 Hb_004410_110 0.1514977863 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000527_050 Hb_000527_050 Hb_010381_100 Hb_010381_100 Hb_000527_050--Hb_010381_100 Hb_021065_010 Hb_021065_010 Hb_000527_050--Hb_021065_010 Hb_001828_110 Hb_001828_110 Hb_000527_050--Hb_001828_110 Hb_001157_050 Hb_001157_050 Hb_000527_050--Hb_001157_050 Hb_000418_170 Hb_000418_170 Hb_000527_050--Hb_000418_170 Hb_001366_290 Hb_001366_290 Hb_000527_050--Hb_001366_290 Hb_010889_010 Hb_010889_010 Hb_010381_100--Hb_010889_010 Hb_004117_090 Hb_004117_090 Hb_010381_100--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_010381_100--Hb_000003_750 Hb_003992_280 Hb_003992_280 Hb_010381_100--Hb_003992_280 Hb_010381_100--Hb_001828_110 Hb_003097_130 Hb_003097_130 Hb_021065_010--Hb_003097_130 Hb_021065_010--Hb_000418_170 Hb_001247_150 Hb_001247_150 Hb_021065_010--Hb_001247_150 Hb_005675_050 Hb_005675_050 Hb_021065_010--Hb_005675_050 Hb_001085_190 Hb_001085_190 Hb_021065_010--Hb_001085_190 Hb_003573_050 Hb_003573_050 Hb_001828_110--Hb_003573_050 Hb_003747_250 Hb_003747_250 Hb_001828_110--Hb_003747_250 Hb_000914_140 Hb_000914_140 Hb_001828_110--Hb_000914_140 Hb_001307_020 Hb_001307_020 Hb_001828_110--Hb_001307_020 Hb_000300_190 Hb_000300_190 Hb_001828_110--Hb_000300_190 Hb_015048_020 Hb_015048_020 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001157_050--Hb_001366_290 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_022092_110 Hb_022092_110 Hb_000418_170--Hb_022092_110 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_001936_180 Hb_001936_180 Hb_000418_170--Hb_001936_180 Hb_000418_170--Hb_005675_050 Hb_002490_060 Hb_002490_060 Hb_001366_290--Hb_002490_060 Hb_039075_020 Hb_039075_020 Hb_001366_290--Hb_039075_020 Hb_001366_290--Hb_000627_040 Hb_001366_290--Hb_015048_020 Hb_007290_050 Hb_007290_050 Hb_001366_290--Hb_007290_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.49402 5.85052 6.44453 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.512442 0.710163 2.21194

CAGE analysis