Hb_001085_190

Information

Type transcription factor
Description TF Family: ERF
Location Contig1085: 140631-141965
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32250g
description POPTRDRAFT_549823; AP2 domain-containing transcription factor family protein
nr
ID XP_002298696.2
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9SVQ0
description Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1
trembl
ID B9GFX1
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=POPTR_0001s32250g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02581: 140680-141023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_190 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_000735_020 0.053583102 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_011918_070 0.092075083 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
4 Hb_009113_080 0.0996282442 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
5 Hb_012518_080 0.1004573526 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
6 Hb_000005_360 0.1049447813 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003606_050 0.1053434348 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
8 Hb_033312_070 0.1059659482 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
9 Hb_000003_750 0.1059826363 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
10 Hb_001936_180 0.1077058479 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
11 Hb_007290_050 0.1084380463 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
12 Hb_015934_080 0.1094699113 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
13 Hb_002292_080 0.1095735209 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_009189_100 0.1099966985 - - PREDICTED: patellin-6 [Jatropha curcas]
15 Hb_003935_040 0.1102431553 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
16 Hb_002272_120 0.1116761913 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
17 Hb_000418_170 0.1130315923 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
18 Hb_002171_020 0.1157037861 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
19 Hb_002073_170 0.1179758982 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
20 Hb_004696_010 0.1196129833 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_190 Hb_001085_190 Hb_000735_020 Hb_000735_020 Hb_001085_190--Hb_000735_020 Hb_011918_070 Hb_011918_070 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_012518_080 Hb_012518_080 Hb_001085_190--Hb_012518_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_003606_050 Hb_003606_050 Hb_001085_190--Hb_003606_050 Hb_000735_020--Hb_012518_080 Hb_000735_020--Hb_011918_070 Hb_033312_070 Hb_033312_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_001946_200 Hb_001946_200 Hb_009113_080--Hb_001946_200 Hb_000977_030 Hb_000977_030 Hb_009113_080--Hb_000977_030 Hb_009113_080--Hb_000005_360 Hb_003125_210 Hb_003125_210 Hb_009113_080--Hb_003125_210 Hb_001318_100 Hb_001318_100 Hb_009113_080--Hb_001318_100 Hb_012518_080--Hb_002292_080 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_012518_080--Hb_033312_070 Hb_012518_080--Hb_011918_070 Hb_000329_720 Hb_000329_720 Hb_000005_360--Hb_000329_720 Hb_002171_020 Hb_002171_020 Hb_000005_360--Hb_002171_020 Hb_009189_100 Hb_009189_100 Hb_000005_360--Hb_009189_100 Hb_012404_020 Hb_012404_020 Hb_000005_360--Hb_012404_020 Hb_000742_130 Hb_000742_130 Hb_000005_360--Hb_000742_130 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0508688 0.676934 2.76442 4.77902 0 0.0412834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0357573 0.0281293 0.105191 0.832318 1.75618

CAGE analysis