Hb_001946_200

Information

Type -
Description -
Location Contig1946: 200277-204547
Sequence    

Annotation

kegg
ID cic:CICLE_v10008397mg
description hypothetical protein
nr
ID XP_012078775.1
description PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
swissprot
ID Q9EPI1
description Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1
trembl
ID A0A067KKQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13319 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19403: 200223-204456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_200 0.0 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
2 Hb_001440_010 0.0754926298 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
3 Hb_022092_110 0.0811555307 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
4 Hb_001936_180 0.0863895223 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
5 Hb_009113_080 0.0941957557 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
6 Hb_026240_020 0.0942334319 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
7 Hb_032920_030 0.0947219047 - - signal transducer, putative [Ricinus communis]
8 Hb_106089_010 0.0981107795 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_000645_160 0.1009690591 - - protein translocase, putative [Ricinus communis]
10 Hb_000977_030 0.1020530783 - - unnamed protein product [Vitis vinifera]
11 Hb_003454_050 0.1041918791 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
12 Hb_000834_220 0.1055366951 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
13 Hb_000856_200 0.1058929466 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
14 Hb_005730_110 0.1083452549 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
15 Hb_001269_400 0.1083960774 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_003656_090 0.1121388334 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
17 Hb_000230_360 0.1136305544 - - PREDICTED: BI1-like protein [Jatropha curcas]
18 Hb_003266_090 0.1137649255 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
19 Hb_003029_120 0.1140804674 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
20 Hb_000365_430 0.1141042574 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]

Gene co-expression network

sample Hb_001946_200 Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_001946_200--Hb_001440_010 Hb_022092_110 Hb_022092_110 Hb_001946_200--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_001946_200--Hb_001936_180 Hb_009113_080 Hb_009113_080 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_000834_220 Hb_000834_220 Hb_001440_010--Hb_000834_220 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_001440_010--Hb_001936_180 Hb_001440_010--Hb_022092_110 Hb_022092_110--Hb_001936_180 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_000418_170 Hb_000418_170 Hb_022092_110--Hb_000418_170 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_001936_180--Hb_000418_170 Hb_001085_190 Hb_001085_190 Hb_009113_080--Hb_001085_190 Hb_000977_030 Hb_000977_030 Hb_009113_080--Hb_000977_030 Hb_000005_360 Hb_000005_360 Hb_009113_080--Hb_000005_360 Hb_003125_210 Hb_003125_210 Hb_009113_080--Hb_003125_210 Hb_001318_100 Hb_001318_100 Hb_009113_080--Hb_001318_100 Hb_026240_020--Hb_000977_030 Hb_003092_020 Hb_003092_020 Hb_026240_020--Hb_003092_020 Hb_005892_040 Hb_005892_040 Hb_026240_020--Hb_005892_040 Hb_003454_050 Hb_003454_050 Hb_026240_020--Hb_003454_050 Hb_005730_110 Hb_005730_110 Hb_026240_020--Hb_005730_110 Hb_003506_010 Hb_003506_010 Hb_026240_020--Hb_003506_010 Hb_032920_030--Hb_000645_160 Hb_032920_030--Hb_001440_010 Hb_000742_130 Hb_000742_130 Hb_032920_030--Hb_000742_130 Hb_000098_260 Hb_000098_260 Hb_032920_030--Hb_000098_260 Hb_032920_030--Hb_001936_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.170239 8.83133 20.1922 28.1492 0.661358 0.53664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0789095 0.0620849 0.195435 8.83049 15.589

CAGE analysis