Hb_000418_170

Information

Type -
Description -
Location Contig418: 219414-247533
Sequence    

Annotation

kegg
ID rcu:RCOM_1092530
description mgatp-energized glutathione s-conjugate pump, putative (EC:1.3.1.74)
nr
ID XP_011001136.1
description PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
swissprot
ID Q9C8H0
description ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1
trembl
ID B9SKU1
description Mgatp-energized glutathione s-conjugate pump, putative OS=Ricinus communis GN=RCOM_1092530 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41339: 211770-236264 , PASA_asmbl_41340: 236990-237986 , PASA_asmbl_41341: 238682-240478 , PASA_asmbl_41342: 242153-242844 , PASA_asmbl_41343: 242919-244742 , PASA_asmbl_41345: 245198-245727 , PASA_asmbl_41346: 246167-246889 , PASA_asmbl_41347: 246915-247591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_170 0.0 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
2 Hb_000627_040 0.0889267492 - - leucine-rich repeat protein, putative [Ricinus communis]
3 Hb_022092_110 0.0895116241 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
4 Hb_005730_110 0.0909906642 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
5 Hb_001936_180 0.0920349361 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
6 Hb_005675_050 0.0956657849 - - alpha-glucosidase, putative [Ricinus communis]
7 Hb_021065_010 0.0982812592 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
8 Hb_128196_010 0.1017424214 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004592_010 0.1031750886 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
10 Hb_001366_290 0.1042371044 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
11 Hb_001157_050 0.1043074485 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
12 Hb_000735_060 0.1052696307 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_121313_010 0.106552162 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
14 Hb_005568_020 0.1065887278 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
15 Hb_026240_020 0.1078918374 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
16 Hb_003666_070 0.1108157757 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
17 Hb_003573_050 0.1115462332 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_002490_060 0.1123992822 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
19 Hb_001085_190 0.1130315923 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
20 Hb_028008_040 0.1131230144 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000418_170 Hb_000418_170 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_022092_110 Hb_022092_110 Hb_000418_170--Hb_022092_110 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_001936_180 Hb_001936_180 Hb_000418_170--Hb_001936_180 Hb_005675_050 Hb_005675_050 Hb_000418_170--Hb_005675_050 Hb_021065_010 Hb_021065_010 Hb_000418_170--Hb_021065_010 Hb_002490_060 Hb_002490_060 Hb_000627_040--Hb_002490_060 Hb_007237_020 Hb_007237_020 Hb_000627_040--Hb_007237_020 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_000627_040--Hb_005730_110 Hb_002053_180 Hb_002053_180 Hb_000627_040--Hb_002053_180 Hb_006922_020 Hb_006922_020 Hb_000627_040--Hb_006922_020 Hb_022092_110--Hb_001936_180 Hb_001946_200 Hb_001946_200 Hb_022092_110--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_022092_110--Hb_001440_010 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_012404_020 Hb_012404_020 Hb_005730_110--Hb_012404_020 Hb_005730_110--Hb_022092_110 Hb_004592_010 Hb_004592_010 Hb_005730_110--Hb_004592_010 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001936_180--Hb_001440_010 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_004122_010 Hb_004122_010 Hb_005675_050--Hb_004122_010 Hb_003666_070 Hb_003666_070 Hb_005675_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_005675_050--Hb_007632_160 Hb_000739_170 Hb_000739_170 Hb_005675_050--Hb_000739_170 Hb_003097_130 Hb_003097_130 Hb_005675_050--Hb_003097_130 Hb_021065_010--Hb_003097_130 Hb_001247_150 Hb_001247_150 Hb_021065_010--Hb_001247_150 Hb_021065_010--Hb_005675_050 Hb_000527_050 Hb_000527_050 Hb_021065_010--Hb_000527_050 Hb_001085_190 Hb_001085_190 Hb_021065_010--Hb_001085_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042062 1.39046 6.48032 6.07429 0.00336209 0.0254912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0406733 0.0448139 0.172646 1.57557 3.30323

CAGE analysis