Hb_004122_010

Information

Type -
Description -
Location Contig4122: 12827-15148
Sequence    

Annotation

kegg
ID rcu:RCOM_1589570
description hypothetical protein
nr
ID XP_012068305.1
description PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
swissprot
ID Q96UB6
description Protein ssh4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ssh4 PE=3 SV=2
trembl
ID A0A067LCB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16106 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40804: 12527-15164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004122_010 0.0 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
2 Hb_005675_050 0.0626286124 - - alpha-glucosidase, putative [Ricinus communis]
3 Hb_000297_210 0.0820815603 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
4 Hb_001514_030 0.0854152454 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
5 Hb_007632_160 0.0863104522 - - conserved hypothetical protein [Ricinus communis]
6 Hb_168918_010 0.091547802 - - pectin acetylesterase, putative [Ricinus communis]
7 Hb_005181_170 0.0974786572 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
8 Hb_000739_170 0.0993257803 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
9 Hb_009767_060 0.0995743568 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_001079_060 0.1001816918 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
11 Hb_008304_010 0.1009190223 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
12 Hb_003938_230 0.1025419761 - - Potassium transporter, putative [Ricinus communis]
13 Hb_003666_070 0.1028902694 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
14 Hb_004037_040 0.1040990522 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_001516_010 0.108822958 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
16 Hb_001348_040 0.1097150685 - - hypothetical protein VITISV_006651 [Vitis vinifera]
17 Hb_002045_010 0.1105954817 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
18 Hb_003097_130 0.1157651062 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000112_080 0.1159859058 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
20 Hb_001157_050 0.1195335918 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004122_010 Hb_004122_010 Hb_005675_050 Hb_005675_050 Hb_004122_010--Hb_005675_050 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_001514_030 Hb_001514_030 Hb_004122_010--Hb_001514_030 Hb_007632_160 Hb_007632_160 Hb_004122_010--Hb_007632_160 Hb_168918_010 Hb_168918_010 Hb_004122_010--Hb_168918_010 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_003666_070 Hb_003666_070 Hb_005675_050--Hb_003666_070 Hb_005675_050--Hb_007632_160 Hb_000739_170 Hb_000739_170 Hb_005675_050--Hb_000739_170 Hb_003097_130 Hb_003097_130 Hb_005675_050--Hb_003097_130 Hb_000418_170 Hb_000418_170 Hb_005675_050--Hb_000418_170 Hb_000297_210--Hb_005181_170 Hb_000297_210--Hb_007632_160 Hb_001348_100 Hb_001348_100 Hb_000297_210--Hb_001348_100 Hb_000297_210--Hb_005675_050 Hb_005276_190 Hb_005276_190 Hb_000297_210--Hb_005276_190 Hb_001514_030--Hb_168918_010 Hb_004037_040 Hb_004037_040 Hb_001514_030--Hb_004037_040 Hb_001079_060 Hb_001079_060 Hb_001514_030--Hb_001079_060 Hb_001516_010 Hb_001516_010 Hb_001514_030--Hb_001516_010 Hb_007218_040 Hb_007218_040 Hb_001514_030--Hb_007218_040 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_000120_340 Hb_000120_340 Hb_007632_160--Hb_000120_340 Hb_000086_470 Hb_000086_470 Hb_007632_160--Hb_000086_470 Hb_168918_010--Hb_007218_040 Hb_168918_010--Hb_003666_070 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_168918_010--Hb_004037_040 Hb_000112_080 Hb_000112_080 Hb_005181_170--Hb_000112_080 Hb_005181_170--Hb_007218_040 Hb_001140_300 Hb_001140_300 Hb_005181_170--Hb_001140_300 Hb_001396_030 Hb_001396_030 Hb_005181_170--Hb_001396_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.310388 6.9401 5.80624 0.0110616 0.0386841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251179 0 0.0747475 1.16478 3.28963

CAGE analysis