Hb_168918_010

Information

Type -
Description -
Location Contig168918: 10400-13910
Sequence    

Annotation

kegg
ID rcu:RCOM_0867170
description pectin acetylesterase, putative
nr
ID XP_002519912.1
description pectin acetylesterase, putative [Ricinus communis]
swissprot
ID Q940J8
description Pectin acetylesterase 7 OS=Arabidopsis thaliana GN=PAE7 PE=2 SV=1
trembl
ID B9S1P7
description Pectin acetylesterase, putative OS=Ricinus communis GN=RCOM_0867170 PE=4 SV=1
Gene Ontology
ID GO:0052689
description pectinacetylesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15670: 10441-13906 , PASA_asmbl_15671: 10614-13907
cDNA
(Sanger)
(ID:Location)		 029_O18.ab1: 10620-11891 , 032_E16.ab1: 10620-12223 , 035_O12.ab1: 10614-12233 , 046_I04.ab1: 10441-11868 , 047_B16.ab1: 10620-12371

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168918_010 0.0 - - pectin acetylesterase, putative [Ricinus communis]
2 Hb_001514_030 0.0513426014 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
3 Hb_007218_040 0.079277172 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
4 Hb_003666_070 0.0901273519 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
5 Hb_004122_010 0.091547802 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
6 Hb_005976_110 0.0950485366 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
7 Hb_004037_040 0.0972179411 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
8 Hb_004435_020 0.098847318 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
9 Hb_005675_050 0.1004378853 - - alpha-glucosidase, putative [Ricinus communis]
10 Hb_011918_070 0.1005321395 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_000996_030 0.1006994243 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
12 Hb_000003_750 0.1015972758 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
13 Hb_001516_010 0.102276598 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
14 Hb_001544_090 0.1023739012 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_007811_020 0.1047156545 - - PREDICTED: expansin-A6 [Jatropha curcas]
16 Hb_070498_010 0.106501138 - - receptor kinase, putative [Ricinus communis]
17 Hb_003938_230 0.1065924166 - - Potassium transporter, putative [Ricinus communis]
18 Hb_000112_080 0.1074078721 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
19 Hb_001079_060 0.1074420063 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
20 Hb_007617_010 0.1078172279 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_168918_010 Hb_168918_010 Hb_001514_030 Hb_001514_030 Hb_168918_010--Hb_001514_030 Hb_007218_040 Hb_007218_040 Hb_168918_010--Hb_007218_040 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_004122_010 Hb_004122_010 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_004037_040 Hb_004037_040 Hb_168918_010--Hb_004037_040 Hb_001514_030--Hb_004037_040 Hb_001079_060 Hb_001079_060 Hb_001514_030--Hb_001079_060 Hb_001516_010 Hb_001516_010 Hb_001514_030--Hb_001516_010 Hb_001514_030--Hb_004122_010 Hb_001514_030--Hb_007218_040 Hb_001140_300 Hb_001140_300 Hb_007218_040--Hb_001140_300 Hb_001396_030 Hb_001396_030 Hb_007218_040--Hb_001396_030 Hb_000112_080 Hb_000112_080 Hb_007218_040--Hb_000112_080 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020 Hb_000120_340 Hb_000120_340 Hb_003666_070--Hb_000120_340 Hb_005675_050 Hb_005675_050 Hb_003666_070--Hb_005675_050 Hb_004592_010 Hb_004592_010 Hb_003666_070--Hb_004592_010 Hb_007632_160 Hb_007632_160 Hb_003666_070--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_003666_070--Hb_011671_050 Hb_004122_010--Hb_005675_050 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_004122_010--Hb_007632_160 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_001544_090 Hb_001544_090 Hb_005976_110--Hb_001544_090 Hb_005976_110--Hb_004435_020 Hb_001095_020 Hb_001095_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_000032_420 Hb_000032_420 Hb_005976_110--Hb_000032_420 Hb_004037_040--Hb_001079_060 Hb_000189_180 Hb_000189_180 Hb_004037_040--Hb_000189_180 Hb_001958_010 Hb_001958_010 Hb_004037_040--Hb_001958_010 Hb_016333_010 Hb_016333_010 Hb_004037_040--Hb_016333_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.54373 24.006 385.821 398.063 3.3974 1.83471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0565155 0.0444643 0.879952 53.0961 218.94

CAGE analysis