Hb_000680_170

Information

Type -
Description -
Location Contig680: 197239-203972
Sequence    

Annotation

kegg
ID rcu:RCOM_0312720
description phospholipase d, putative (EC:3.1.4.4)
nr
ID KDP40790.1
description hypothetical protein JCGZ_24789 [Jatropha curcas]
swissprot
ID Q9C888
description Phospholipase D epsilon OS=Arabidopsis thaliana GN=PLDEPSILON PE=3 SV=1
trembl
ID A0A067L8H5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24789 PE=4 SV=1
Gene Ontology
ID GO:0005886
description phospholipase d epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53765: 197430-198933 , PASA_asmbl_53766: 200947-201112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_170 0.0 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
2 Hb_000032_420 0.0806785989 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
3 Hb_005976_110 0.086636687 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
4 Hb_017383_010 0.0879244414 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
5 Hb_010449_010 0.0915962184 - - l-ascorbate oxidase, putative [Ricinus communis]
6 Hb_001674_010 0.0917515906 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
7 Hb_001095_020 0.0969188977 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
8 Hb_008054_030 0.0981540044 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
9 Hb_001544_090 0.0982373663 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_002066_110 0.0993103413 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_000718_060 0.0998655577 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
12 Hb_007163_100 0.1005411026 - - BnaC03g52280D [Brassica napus]
13 Hb_084303_010 0.1013375404 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000622_050 0.1020207091 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003339_010 0.1028945071 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
16 Hb_017434_010 0.1071017869 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
17 Hb_012098_160 0.1073095993 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
18 Hb_000878_050 0.1082603526 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_000028_190 0.1103972737 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
20 Hb_001117_050 0.1113716803 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]

Gene co-expression network

sample Hb_000680_170 Hb_000680_170 Hb_000032_420 Hb_000032_420 Hb_000680_170--Hb_000032_420 Hb_005976_110 Hb_005976_110 Hb_000680_170--Hb_005976_110 Hb_017383_010 Hb_017383_010 Hb_000680_170--Hb_017383_010 Hb_010449_010 Hb_010449_010 Hb_000680_170--Hb_010449_010 Hb_001674_010 Hb_001674_010 Hb_000680_170--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_000680_170--Hb_001095_020 Hb_000032_420--Hb_010449_010 Hb_000032_420--Hb_017383_010 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_005976_110--Hb_001544_090 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_005976_110--Hb_000032_420 Hb_017383_010--Hb_010449_010 Hb_000103_220 Hb_000103_220 Hb_017383_010--Hb_000103_220 Hb_000077_280 Hb_000077_280 Hb_017383_010--Hb_000077_280 Hb_017434_010 Hb_017434_010 Hb_017383_010--Hb_017434_010 Hb_001794_040 Hb_001794_040 Hb_017383_010--Hb_001794_040 Hb_010449_010--Hb_017434_010 Hb_010449_010--Hb_000103_220 Hb_010449_010--Hb_000996_070 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001674_010--Hb_001095_020 Hb_000028_190 Hb_000028_190 Hb_001674_010--Hb_000028_190 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270 Hb_002150_090 Hb_002150_090 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110 Hb_001095_020--Hb_002150_090 Hb_001095_020--Hb_000028_190 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0287972 0.24908 1.22039 1.43739 0.00644172 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0219677 0.0546646 1.00457

CAGE analysis