Hb_000441_130

Information

Type -
Description -
Location Contig441: 156394-162364
Sequence    

Annotation

kegg
ID vvi:100254822
description homeobox-leucine zipper protein HOX32
nr
ID XP_002281868.2
description PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
swissprot
ID Q6AST1
description Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1
trembl
ID A5AMZ1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04670 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42632: 159654-160320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_130 0.0 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
2 Hb_000996_070 0.0765758293 - - unnamed protein product [Vitis vinifera]
3 Hb_000032_420 0.0789738893 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
4 Hb_017383_010 0.0824539144 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
5 Hb_010449_010 0.085035087 - - l-ascorbate oxidase, putative [Ricinus communis]
6 Hb_004137_110 0.0876962491 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
7 Hb_000077_280 0.0945019218 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000342_040 0.0950347527 - - pollen specific protein sf21, putative [Ricinus communis]
9 Hb_005496_040 0.0983722073 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
10 Hb_000103_220 0.0987056523 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
11 Hb_020738_010 0.0990431573 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
12 Hb_005977_080 0.1073588695 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
13 Hb_059275_010 0.1082998167 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
14 Hb_000022_080 0.1083740114 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
15 Hb_098315_060 0.1131107166 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
16 Hb_002301_400 0.1152304948 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_001157_050 0.1156020437 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
18 Hb_001159_090 0.1159272496 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
19 Hb_017434_010 0.1161918023 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_001794_040 0.1176657511 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_130 Hb_000441_130 Hb_000996_070 Hb_000996_070 Hb_000441_130--Hb_000996_070 Hb_000032_420 Hb_000032_420 Hb_000441_130--Hb_000032_420 Hb_017383_010 Hb_017383_010 Hb_000441_130--Hb_017383_010 Hb_010449_010 Hb_010449_010 Hb_000441_130--Hb_010449_010 Hb_004137_110 Hb_004137_110 Hb_000441_130--Hb_004137_110 Hb_000077_280 Hb_000077_280 Hb_000441_130--Hb_000077_280 Hb_000996_070--Hb_010449_010 Hb_000996_070--Hb_000032_420 Hb_001157_050 Hb_001157_050 Hb_000996_070--Hb_001157_050 Hb_006196_030 Hb_006196_030 Hb_000996_070--Hb_006196_030 Hb_001794_040 Hb_001794_040 Hb_000996_070--Hb_001794_040 Hb_000032_420--Hb_010449_010 Hb_000032_420--Hb_017383_010 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_017383_010--Hb_010449_010 Hb_000103_220 Hb_000103_220 Hb_017383_010--Hb_000103_220 Hb_017383_010--Hb_000077_280 Hb_017434_010 Hb_017434_010 Hb_017383_010--Hb_017434_010 Hb_017383_010--Hb_001794_040 Hb_010449_010--Hb_017434_010 Hb_010449_010--Hb_000103_220 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_005977_080 Hb_005977_080 Hb_004137_110--Hb_005977_080 Hb_004137_110--Hb_010449_010 Hb_004137_110--Hb_000103_220 Hb_023640_020 Hb_023640_020 Hb_004137_110--Hb_023640_020 Hb_004137_110--Hb_017434_010 Hb_004223_060 Hb_004223_060 Hb_000077_280--Hb_004223_060 Hb_020738_010 Hb_020738_010 Hb_000077_280--Hb_020738_010 Hb_000077_280--Hb_000032_420 Hb_007904_280 Hb_007904_280 Hb_000077_280--Hb_007904_280 Hb_000077_280--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222247 2.29688 12.5859 13.3565 0.0356646 0.0186804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.096997 0 0 0.307974 4.90304

CAGE analysis