Hb_020738_010

Information

Type -
Description -
Location Contig20738: 5069-7630
Sequence    

Annotation

kegg
ID rcu:RCOM_0639210
description ATP binding protein, putative (EC:2.7.10.1 3.1.3.16)
nr
ID XP_012071498.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
swissprot
ID C0LGK9
description Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1
trembl
ID B9T3Y7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0639210 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at2g24230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21401: 4858-8165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020738_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
2 Hb_011574_020 0.0658468073 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
3 Hb_059275_010 0.0706436515 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
4 Hb_001794_040 0.0775896629 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
5 Hb_050898_030 0.0784309051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000012_350 0.0807887812 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
7 Hb_000077_280 0.0808700991 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000032_420 0.0847489097 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
9 Hb_017383_010 0.0916474125 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
10 Hb_001638_340 0.0918363577 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007904_280 0.0956764533 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
12 Hb_001117_050 0.0981969039 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
13 Hb_000003_370 0.0982887968 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
14 Hb_000441_130 0.0990431573 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
15 Hb_001136_160 0.10180833 - - catalytic, putative [Ricinus communis]
16 Hb_010449_010 0.1040397328 - - l-ascorbate oxidase, putative [Ricinus communis]
17 Hb_004531_130 0.104347809 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
18 Hb_011853_020 0.1051688566 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
19 Hb_000586_110 0.1052764232 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_004223_060 0.1077906524 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_020738_010 Hb_020738_010 Hb_011574_020 Hb_011574_020 Hb_020738_010--Hb_011574_020 Hb_059275_010 Hb_059275_010 Hb_020738_010--Hb_059275_010 Hb_001794_040 Hb_001794_040 Hb_020738_010--Hb_001794_040 Hb_050898_030 Hb_050898_030 Hb_020738_010--Hb_050898_030 Hb_000012_350 Hb_000012_350 Hb_020738_010--Hb_000012_350 Hb_000077_280 Hb_000077_280 Hb_020738_010--Hb_000077_280 Hb_001638_340 Hb_001638_340 Hb_011574_020--Hb_001638_340 Hb_011574_020--Hb_059275_010 Hb_011574_020--Hb_000012_350 Hb_008895_020 Hb_008895_020 Hb_011574_020--Hb_008895_020 Hb_011574_020--Hb_001794_040 Hb_001715_060 Hb_001715_060 Hb_059275_010--Hb_001715_060 Hb_029977_030 Hb_029977_030 Hb_059275_010--Hb_029977_030 Hb_000586_110 Hb_000586_110 Hb_059275_010--Hb_000586_110 Hb_059275_010--Hb_001638_340 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_001794_040--Hb_000012_350 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010 Hb_002918_270 Hb_002918_270 Hb_050898_030--Hb_002918_270 Hb_007122_020 Hb_007122_020 Hb_050898_030--Hb_007122_020 Hb_015292_020 Hb_015292_020 Hb_050898_030--Hb_015292_020 Hb_001136_160 Hb_001136_160 Hb_050898_030--Hb_001136_160 Hb_001025_130 Hb_001025_130 Hb_050898_030--Hb_001025_130 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_000077_280--Hb_017383_010 Hb_004223_060 Hb_004223_060 Hb_000077_280--Hb_004223_060 Hb_000077_280--Hb_000032_420 Hb_007904_280 Hb_007904_280 Hb_000077_280--Hb_007904_280 Hb_000103_220 Hb_000103_220 Hb_000077_280--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022745 1.08741 3.93158 6.3106 0.0217817 0.00711452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0258227 0.155884 2.04436

CAGE analysis