Hb_011574_020

Information

Type -
Description -
Location Contig11574: 36438-39573
Sequence    

Annotation

kegg
ID rcu:RCOM_1013130
description calmodulin, putative
nr
ID KDP21053.1
description hypothetical protein JCGZ_21524 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21524 PE=4 SV=1
Gene Ontology
ID GO:0005509
description sodium calcium exchanger family protein calcium-binding ef hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011574_020 0.0 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
2 Hb_020738_010 0.0658468073 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
3 Hb_001638_340 0.0689931213 - - conserved hypothetical protein [Ricinus communis]
4 Hb_059275_010 0.0750745411 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
5 Hb_000012_350 0.0752262981 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
6 Hb_008895_020 0.1015563956 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
7 Hb_001794_040 0.1027894548 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
8 Hb_000077_280 0.1048402573 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_011853_020 0.1084014089 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
10 Hb_096027_010 0.1111984622 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_001408_080 0.1113292353 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
12 Hb_029977_030 0.1113742618 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
13 Hb_001427_100 0.1127633823 - - acc synthase, putative [Ricinus communis]
14 Hb_017383_010 0.1138401213 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
15 Hb_000003_370 0.1141952055 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
16 Hb_007904_280 0.1155115261 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
17 Hb_000749_290 0.1171694599 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
18 Hb_001715_060 0.1174068425 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
19 Hb_004531_130 0.1182405991 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
20 Hb_000827_020 0.1184918883 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_011574_020 Hb_011574_020 Hb_020738_010 Hb_020738_010 Hb_011574_020--Hb_020738_010 Hb_001638_340 Hb_001638_340 Hb_011574_020--Hb_001638_340 Hb_059275_010 Hb_059275_010 Hb_011574_020--Hb_059275_010 Hb_000012_350 Hb_000012_350 Hb_011574_020--Hb_000012_350 Hb_008895_020 Hb_008895_020 Hb_011574_020--Hb_008895_020 Hb_001794_040 Hb_001794_040 Hb_011574_020--Hb_001794_040 Hb_020738_010--Hb_059275_010 Hb_020738_010--Hb_001794_040 Hb_050898_030 Hb_050898_030 Hb_020738_010--Hb_050898_030 Hb_020738_010--Hb_000012_350 Hb_000077_280 Hb_000077_280 Hb_020738_010--Hb_000077_280 Hb_001638_340--Hb_008895_020 Hb_124677_090 Hb_124677_090 Hb_001638_340--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_001638_340--Hb_001477_060 Hb_001638_340--Hb_000012_350 Hb_001638_340--Hb_059275_010 Hb_001715_060 Hb_001715_060 Hb_059275_010--Hb_001715_060 Hb_029977_030 Hb_029977_030 Hb_059275_010--Hb_029977_030 Hb_000586_110 Hb_000586_110 Hb_059275_010--Hb_000586_110 Hb_000012_350--Hb_001794_040 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_006651_030 Hb_006651_030 Hb_008895_020--Hb_006651_030 Hb_008895_020--Hb_029977_030 Hb_008895_020--Hb_124677_090 Hb_008895_020--Hb_001477_060 Hb_008895_020--Hb_059275_010 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0201593 0.601847 1.58221 2.79318 0.0258675 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0305801 0.0255833 1.02262

CAGE analysis