Hb_001638_340

Information

Type -
Description -
Location Contig1638: 258958-259632
Sequence    

Annotation

kegg
ID rcu:RCOM_1339920
description hypothetical protein
nr
ID XP_002515080.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID B9RNK9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein yls9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15037: 258852-259756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011574_020 0.0689931213 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
3 Hb_008895_020 0.0794364703 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
4 Hb_124677_090 0.0857937818 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001477_060 0.0867991374 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
6 Hb_000012_350 0.0904955742 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
7 Hb_059275_010 0.0905388942 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
8 Hb_020738_010 0.0918363577 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
9 Hb_001715_060 0.0929775132 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
10 Hb_001427_100 0.0963651938 - - acc synthase, putative [Ricinus communis]
11 Hb_001794_040 0.0964887861 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
12 Hb_039946_060 0.1040144349 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
13 Hb_009222_040 0.1088030391 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
14 Hb_001408_080 0.112209855 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
15 Hb_007357_010 0.1147297409 - - cytochrome P450, putative [Ricinus communis]
16 Hb_029977_030 0.1164431231 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
17 Hb_004531_130 0.1184574508 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
18 Hb_002518_220 0.1194351225 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
19 Hb_004450_020 0.1196453714 - - serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_005111_020 0.12015114 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001638_340 Hb_001638_340 Hb_011574_020 Hb_011574_020 Hb_001638_340--Hb_011574_020 Hb_008895_020 Hb_008895_020 Hb_001638_340--Hb_008895_020 Hb_124677_090 Hb_124677_090 Hb_001638_340--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_001638_340--Hb_001477_060 Hb_000012_350 Hb_000012_350 Hb_001638_340--Hb_000012_350 Hb_059275_010 Hb_059275_010 Hb_001638_340--Hb_059275_010 Hb_020738_010 Hb_020738_010 Hb_011574_020--Hb_020738_010 Hb_011574_020--Hb_059275_010 Hb_011574_020--Hb_000012_350 Hb_011574_020--Hb_008895_020 Hb_001794_040 Hb_001794_040 Hb_011574_020--Hb_001794_040 Hb_006651_030 Hb_006651_030 Hb_008895_020--Hb_006651_030 Hb_029977_030 Hb_029977_030 Hb_008895_020--Hb_029977_030 Hb_008895_020--Hb_124677_090 Hb_008895_020--Hb_001477_060 Hb_008895_020--Hb_059275_010 Hb_124677_090--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_124677_090--Hb_007357_010 Hb_054926_010 Hb_054926_010 Hb_124677_090--Hb_054926_010 Hb_001715_060 Hb_001715_060 Hb_124677_090--Hb_001715_060 Hb_009222_040 Hb_009222_040 Hb_001477_060--Hb_009222_040 Hb_001477_060--Hb_007357_010 Hb_161103_010 Hb_161103_010 Hb_001477_060--Hb_161103_010 Hb_000012_350--Hb_001794_040 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_059275_010--Hb_020738_010 Hb_059275_010--Hb_001715_060 Hb_059275_010--Hb_029977_030 Hb_000586_110 Hb_000586_110 Hb_059275_010--Hb_000586_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120156 15.1162 27.7631 45.2079 0.357948 0.0822227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.237818 0.6546 16.7323

CAGE analysis