Hb_008895_020

Information

Type -
Description -
Location Contig8895: 35109-36079
Sequence    

Annotation

kegg
ID tcc:TCM_008102
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
nr
ID XP_007043592.1
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EAV9
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao GN=TCM_008102 PE=4 SV=1
Gene Ontology
ID GO:0016740
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61549: 35177-36092 , PASA_asmbl_61550: 35177-35748 , PASA_asmbl_61551: 35783-36092
cDNA
(Sanger)
(ID:Location)		 032_N13.ab1: 35196-36092

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008895_020 0.0 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
2 Hb_001638_340 0.0794364703 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006651_030 0.0828017662 - - unnamed protein product [Homo sapiens]
4 Hb_029977_030 0.0833990935 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
5 Hb_124677_090 0.0837331204 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001477_060 0.0973621813 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
7 Hb_059275_010 0.0981142921 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
8 Hb_001794_040 0.0981802594 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_017383_010 0.0991401678 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
10 Hb_001715_060 0.1012227252 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
11 Hb_011574_020 0.1015563956 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
12 Hb_000077_280 0.1040295432 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_020738_010 0.1113123609 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
14 Hb_007357_010 0.1124061607 - - cytochrome P450, putative [Ricinus communis]
15 Hb_007123_010 0.1154249591 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
16 Hb_000996_070 0.1170702363 - - unnamed protein product [Vitis vinifera]
17 Hb_000032_420 0.117415408 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
18 Hb_000012_350 0.117730663 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
19 Hb_000928_280 0.1179484886 - - hypothetical protein VITISV_005300 [Vitis vinifera]
20 Hb_000185_130 0.1182346026 - - UBX domain-containing protein 8-B, putative [Ricinus communis]

Gene co-expression network

sample Hb_008895_020 Hb_008895_020 Hb_001638_340 Hb_001638_340 Hb_008895_020--Hb_001638_340 Hb_006651_030 Hb_006651_030 Hb_008895_020--Hb_006651_030 Hb_029977_030 Hb_029977_030 Hb_008895_020--Hb_029977_030 Hb_124677_090 Hb_124677_090 Hb_008895_020--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_008895_020--Hb_001477_060 Hb_059275_010 Hb_059275_010 Hb_008895_020--Hb_059275_010 Hb_011574_020 Hb_011574_020 Hb_001638_340--Hb_011574_020 Hb_001638_340--Hb_124677_090 Hb_001638_340--Hb_001477_060 Hb_000012_350 Hb_000012_350 Hb_001638_340--Hb_000012_350 Hb_001638_340--Hb_059275_010 Hb_006651_030--Hb_029977_030 Hb_011909_050 Hb_011909_050 Hb_006651_030--Hb_011909_050 Hb_008406_060 Hb_008406_060 Hb_006651_030--Hb_008406_060 Hb_001766_130 Hb_001766_130 Hb_006651_030--Hb_001766_130 Hb_161103_010 Hb_161103_010 Hb_006651_030--Hb_161103_010 Hb_096027_010 Hb_096027_010 Hb_029977_030--Hb_096027_010 Hb_029977_030--Hb_059275_010 Hb_011853_020 Hb_011853_020 Hb_029977_030--Hb_011853_020 Hb_001715_060 Hb_001715_060 Hb_029977_030--Hb_001715_060 Hb_124677_090--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_124677_090--Hb_007357_010 Hb_054926_010 Hb_054926_010 Hb_124677_090--Hb_054926_010 Hb_124677_090--Hb_001715_060 Hb_009222_040 Hb_009222_040 Hb_001477_060--Hb_009222_040 Hb_001477_060--Hb_007357_010 Hb_001477_060--Hb_161103_010 Hb_020738_010 Hb_020738_010 Hb_059275_010--Hb_020738_010 Hb_059275_010--Hb_011574_020 Hb_059275_010--Hb_001715_060 Hb_000586_110 Hb_000586_110 Hb_059275_010--Hb_000586_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05713 53.8996 131.557 160.107 0.380363 1.02023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.367448 0.14441 0.254859 1.15067 80.0089

CAGE analysis