Hb_000077_280

Information

Type -
Description -
Location Contig77: 237634-242956
Sequence    

Annotation

kegg
ID rcu:RCOM_1110630
description ankyrin repeat-containing protein, putative
nr
ID XP_002521638.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9S6L9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1110630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57600: 238366-238524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_280 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_017383_010 0.0679719496 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
3 Hb_004223_060 0.0807626134 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
4 Hb_020738_010 0.0808700991 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
5 Hb_000032_420 0.085214525 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
6 Hb_007904_280 0.0853871854 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
7 Hb_000103_220 0.0904450024 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
8 Hb_001794_040 0.0906863619 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_011853_020 0.0915149782 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
10 Hb_000003_370 0.0934900159 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
11 Hb_000441_130 0.0945019218 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
12 Hb_000878_050 0.0955244656 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
13 Hb_059275_010 0.0970296997 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
14 Hb_010449_010 0.0970813353 - - l-ascorbate oxidase, putative [Ricinus communis]
15 Hb_001117_050 0.0995484414 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
16 Hb_000012_350 0.0999811467 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
17 Hb_096027_010 0.1013477058 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001136_160 0.1021891987 - - catalytic, putative [Ricinus communis]
19 Hb_008895_020 0.1040295432 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
20 Hb_011574_020 0.1048402573 - - hypothetical protein JCGZ_21524 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_280 Hb_000077_280 Hb_017383_010 Hb_017383_010 Hb_000077_280--Hb_017383_010 Hb_004223_060 Hb_004223_060 Hb_000077_280--Hb_004223_060 Hb_020738_010 Hb_020738_010 Hb_000077_280--Hb_020738_010 Hb_000032_420 Hb_000032_420 Hb_000077_280--Hb_000032_420 Hb_007904_280 Hb_007904_280 Hb_000077_280--Hb_007904_280 Hb_000103_220 Hb_000103_220 Hb_000077_280--Hb_000103_220 Hb_010449_010 Hb_010449_010 Hb_017383_010--Hb_010449_010 Hb_017383_010--Hb_000032_420 Hb_017383_010--Hb_000103_220 Hb_017434_010 Hb_017434_010 Hb_017383_010--Hb_017434_010 Hb_001794_040 Hb_001794_040 Hb_017383_010--Hb_001794_040 Hb_004223_060--Hb_007904_280 Hb_000878_050 Hb_000878_050 Hb_004223_060--Hb_000878_050 Hb_000003_370 Hb_000003_370 Hb_004223_060--Hb_000003_370 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_004223_060--Hb_000392_110 Hb_011574_020 Hb_011574_020 Hb_020738_010--Hb_011574_020 Hb_059275_010 Hb_059275_010 Hb_020738_010--Hb_059275_010 Hb_020738_010--Hb_001794_040 Hb_050898_030 Hb_050898_030 Hb_020738_010--Hb_050898_030 Hb_000012_350 Hb_000012_350 Hb_020738_010--Hb_000012_350 Hb_000032_420--Hb_010449_010 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_012132_050 Hb_012132_050 Hb_007904_280--Hb_012132_050 Hb_009783_010 Hb_009783_010 Hb_007904_280--Hb_009783_010 Hb_007904_280--Hb_000878_050 Hb_001136_160 Hb_001136_160 Hb_007904_280--Hb_001136_160 Hb_007904_280--Hb_000012_350 Hb_000103_220--Hb_017434_010 Hb_152910_050 Hb_152910_050 Hb_000103_220--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_000103_220--Hb_098315_060 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00931637 0.370952 1.64767 2.47809 0.0070426 0.0263068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0170752 0 0 0.0373411 1.05749

CAGE analysis