Hb_007811_020

Information

Type -
Description -
Location Contig7811: 41095-43057
Sequence    

Annotation

kegg
ID tcc:TCM_021927
description Expansin A4, ALPHA 1.6,EXPA4
nr
ID XP_012074942.1
description PREDICTED: expansin-A6 [Jatropha curcas]
swissprot
ID O48818
description Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1
trembl
ID A0A067KHM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09075 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57975: 41217-43442
cDNA
(Sanger)
(ID:Location)		 017_I19.ab1: 41217-42821 , 019_A24.ab1: 41217-42894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007811_020 0.0 - - PREDICTED: expansin-A6 [Jatropha curcas]
2 Hb_004435_020 0.0719963944 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
3 Hb_001544_090 0.0798891049 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_007218_040 0.0811083555 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
5 Hb_000878_050 0.0843398111 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
6 Hb_000392_110 0.0886901461 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_001541_130 0.0913196322 - - GDSL esterase/lipase [Morus notabilis]
8 Hb_005976_110 0.0914624215 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
9 Hb_001095_020 0.0921215268 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
10 Hb_001396_030 0.0940209293 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
11 Hb_002150_090 0.0980414736 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
12 Hb_111985_100 0.0982147807 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_085962_010 0.09921469 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
14 Hb_005542_120 0.0998192826 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
15 Hb_000003_280 0.0998825168 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001674_010 0.102196176 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
17 Hb_011918_070 0.1028206781 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
18 Hb_000303_060 0.1032585719 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_000190_170 0.1037110242 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
20 Hb_001080_190 0.1037815908 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007811_020 Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007811_020--Hb_004435_020 Hb_001544_090 Hb_001544_090 Hb_007811_020--Hb_001544_090 Hb_007218_040 Hb_007218_040 Hb_007811_020--Hb_007218_040 Hb_000878_050 Hb_000878_050 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_001541_130 Hb_001541_130 Hb_007811_020--Hb_001541_130 Hb_004435_020--Hb_000878_050 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450 Hb_001095_020 Hb_001095_020 Hb_004435_020--Hb_001095_020 Hb_001544_090--Hb_005976_110 Hb_001080_190 Hb_001080_190 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001544_090--Hb_001095_020 Hb_000032_420 Hb_000032_420 Hb_001544_090--Hb_000032_420 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010 Hb_001140_300 Hb_001140_300 Hb_007218_040--Hb_001140_300 Hb_001396_030 Hb_001396_030 Hb_007218_040--Hb_001396_030 Hb_000112_080 Hb_000112_080 Hb_007218_040--Hb_000112_080 Hb_168918_010 Hb_168918_010 Hb_007218_040--Hb_168918_010 Hb_007218_040--Hb_004435_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000878_050--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_004202_020 Hb_004202_020 Hb_000392_110--Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_000392_110--Hb_000483_450 Hb_001117_050 Hb_001117_050 Hb_000392_110--Hb_001117_050 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_001047_090 Hb_001047_090 Hb_000392_110--Hb_001047_090 Hb_001541_130--Hb_001095_020 Hb_002572_040 Hb_002572_040 Hb_001541_130--Hb_002572_040 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_002150_090 Hb_002150_090 Hb_001541_130--Hb_002150_090 Hb_001541_130--Hb_004435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172558 1.22381 15.3368 22.6946 0.0202165 0.0236702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.098769 0.349574 0 2.0452 12.0162

CAGE analysis