Hb_001080_190

Information

Type transcription factor
Description TF Family: OFP
Location Contig1080: 190666-191571
Sequence    

Annotation

kegg
ID rcu:RCOM_0557250
description hypothetical protein
nr
ID XP_002520717.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SKY9
description Transcription repressor OFP16 OS=Arabidopsis thaliana GN=OFP16 PE=2 SV=1
trembl
ID B9S3Z8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0557250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_190 0.0 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
2 Hb_007617_010 0.0620756696 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
3 Hb_001544_090 0.064931424 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_001674_010 0.0727222848 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
5 Hb_001638_200 0.0778534197 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
6 Hb_017434_010 0.0782694232 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_000009_270 0.0813441602 - - Calmodulin, putative [Ricinus communis]
8 Hb_001095_020 0.0836578069 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
9 Hb_002609_120 0.0853921349 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
10 Hb_000005_240 0.0875770416 - - Shugoshin-1, putative [Ricinus communis]
11 Hb_032920_020 0.0891509172 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_005976_110 0.0907693791 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
13 Hb_001439_080 0.090981664 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_009486_050 0.0929663324 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
15 Hb_002411_090 0.0945834707 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
16 Hb_000103_220 0.0949409802 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
17 Hb_001817_210 0.0949811165 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002066_110 0.0950747847 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
19 Hb_098315_060 0.0954572251 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
20 Hb_000032_420 0.0968260233 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_190 Hb_001080_190 Hb_007617_010 Hb_007617_010 Hb_001080_190--Hb_007617_010 Hb_001544_090 Hb_001544_090 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001638_200 Hb_001638_200 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_000009_270 Hb_000009_270 Hb_001080_190--Hb_000009_270 Hb_007617_010--Hb_001544_090 Hb_001439_080 Hb_001439_080 Hb_007617_010--Hb_001439_080 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_005976_110 Hb_005976_110 Hb_007617_010--Hb_005976_110 Hb_001544_090--Hb_005976_110 Hb_001544_090--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_001544_090--Hb_001095_020 Hb_000032_420 Hb_000032_420 Hb_001544_090--Hb_000032_420 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001674_010--Hb_001095_020 Hb_000028_190 Hb_000028_190 Hb_001674_010--Hb_000028_190 Hb_001674_010--Hb_000009_270 Hb_002150_090 Hb_002150_090 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_001638_200--Hb_001439_080 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_032920_020 Hb_000156_110 Hb_000156_110 Hb_001638_200--Hb_000156_110 Hb_000103_220 Hb_000103_220 Hb_017434_010--Hb_000103_220 Hb_098315_060 Hb_098315_060 Hb_017434_010--Hb_098315_060 Hb_152910_050 Hb_152910_050 Hb_017434_010--Hb_152910_050 Hb_017434_010--Hb_000009_270 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120 Hb_000009_270--Hb_002609_120 Hb_000009_270--Hb_001021_120 Hb_000009_270--Hb_032920_020 Hb_000009_270--Hb_098315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0500277 0.586351 6.76366 6.66939 0.0251046 0.0572893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0573956 0.0451369 0 0.309377 4.49029

CAGE analysis