Hb_007617_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig7617: 8778-11582
Sequence    

Annotation

kegg
ID rcu:RCOM_1447390
description hypothetical protein
nr
ID XP_012067264.1
description PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
swissprot
ID Q8GY61
description Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1
trembl
ID A0A067L021
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26804 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh63 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57286: 8515-11544 , PASA_asmbl_57287: 8515-11536
cDNA
(Sanger)
(ID:Location)		 020_L07.ab1: 8515-9245 , 049_P23.ab1: 8515-9254

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007617_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
2 Hb_001080_190 0.0620756696 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_001544_090 0.0780589216 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_001439_080 0.081870181 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_001817_210 0.0861054387 - - conserved hypothetical protein [Ricinus communis]
6 Hb_051663_010 0.0891005827 - - receptor-kinase, putative [Ricinus communis]
7 Hb_005976_110 0.089396049 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
8 Hb_009486_050 0.0894614835 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
9 Hb_000009_270 0.0914723688 - - Calmodulin, putative [Ricinus communis]
10 Hb_000005_240 0.0917088507 - - Shugoshin-1, putative [Ricinus communis]
11 Hb_001638_200 0.0933521728 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
12 Hb_017434_010 0.0943406062 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
13 Hb_001021_120 0.0949926627 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
14 Hb_001674_010 0.0953706434 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
15 Hb_003376_020 0.0990443569 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_004435_020 0.0995514756 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
17 Hb_001095_020 0.100372978 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
18 Hb_000497_250 0.1008899338 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
19 Hb_000342_040 0.1017095054 - - pollen specific protein sf21, putative [Ricinus communis]
20 Hb_002609_120 0.1023950523 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]

Gene co-expression network

sample Hb_007617_010 Hb_007617_010 Hb_001080_190 Hb_001080_190 Hb_007617_010--Hb_001080_190 Hb_001544_090 Hb_001544_090 Hb_007617_010--Hb_001544_090 Hb_001439_080 Hb_001439_080 Hb_007617_010--Hb_001439_080 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_005976_110 Hb_005976_110 Hb_007617_010--Hb_005976_110 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001638_200 Hb_001638_200 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_000009_270 Hb_000009_270 Hb_001080_190--Hb_000009_270 Hb_001544_090--Hb_005976_110 Hb_001544_090--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_001544_090--Hb_001095_020 Hb_000032_420 Hb_000032_420 Hb_001544_090--Hb_000032_420 Hb_001439_080--Hb_001638_200 Hb_001439_080--Hb_001080_190 Hb_009486_050 Hb_009486_050 Hb_001439_080--Hb_009486_050 Hb_000722_030 Hb_000722_030 Hb_001439_080--Hb_000722_030 Hb_000017_200 Hb_000017_200 Hb_001439_080--Hb_000017_200 Hb_001817_210--Hb_001080_190 Hb_000617_360 Hb_000617_360 Hb_001817_210--Hb_000617_360 Hb_001817_210--Hb_001439_080 Hb_001817_210--Hb_017434_010 Hb_000333_020 Hb_000333_020 Hb_001817_210--Hb_000333_020 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_000000_390 Hb_000000_390 Hb_051663_010--Hb_000000_390 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_000922_200 Hb_000922_200 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_051663_010--Hb_009486_050 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_005976_110--Hb_000032_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03605 2.21322 41.3103 41.365 0.108591 0.10662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0840726 0.485066 0.0415667 1.50311 26.5295

CAGE analysis