Hb_005276_190

Information

Type -
Description -
Location Contig5276: 201382-203688
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23030g
description POPTRDRAFT_559543; hypothetical protein
nr
ID XP_012092258.1
description PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H875
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23030g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47100: 202541-203703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_190 0.0 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
2 Hb_002053_100 0.0645258777 - - actin binding protein, putative [Ricinus communis]
3 Hb_000830_010 0.064639136 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001439_240 0.0762600808 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
5 Hb_001349_050 0.0870530432 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
6 Hb_000576_140 0.0957389926 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
7 Hb_002203_010 0.0962290469 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
8 Hb_007632_160 0.0962313081 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000359_100 0.099323147 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000418_110 0.1007521786 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
11 Hb_002894_060 0.1018045076 - - respiratory burst oxidase D [Manihot esculenta]
12 Hb_004005_060 0.1041439213 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
13 Hb_000340_550 0.1072529058 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
14 Hb_000297_210 0.107572799 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
15 Hb_000086_470 0.1099720244 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
16 Hb_000120_340 0.1103163772 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_181744_010 0.1107601877 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_001623_250 0.1114313275 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_001348_100 0.1120558052 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
20 Hb_005116_120 0.115290498 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005276_190 Hb_005276_190 Hb_002053_100 Hb_002053_100 Hb_005276_190--Hb_002053_100 Hb_000830_010 Hb_000830_010 Hb_005276_190--Hb_000830_010 Hb_001439_240 Hb_001439_240 Hb_005276_190--Hb_001439_240 Hb_001349_050 Hb_001349_050 Hb_005276_190--Hb_001349_050 Hb_000576_140 Hb_000576_140 Hb_005276_190--Hb_000576_140 Hb_002203_010 Hb_002203_010 Hb_005276_190--Hb_002203_010 Hb_002053_100--Hb_001439_240 Hb_002053_100--Hb_000830_010 Hb_000340_550 Hb_000340_550 Hb_002053_100--Hb_000340_550 Hb_002053_100--Hb_001349_050 Hb_001301_310 Hb_001301_310 Hb_002053_100--Hb_001301_310 Hb_000830_010--Hb_001439_240 Hb_000830_010--Hb_000340_550 Hb_000830_010--Hb_000576_140 Hb_181744_010 Hb_181744_010 Hb_000830_010--Hb_181744_010 Hb_001439_240--Hb_000340_550 Hb_001439_240--Hb_181744_010 Hb_003777_260 Hb_003777_260 Hb_001439_240--Hb_003777_260 Hb_002894_060 Hb_002894_060 Hb_001349_050--Hb_002894_060 Hb_001623_250 Hb_001623_250 Hb_001349_050--Hb_001623_250 Hb_002818_060 Hb_002818_060 Hb_001349_050--Hb_002818_060 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_000317_120 Hb_000317_120 Hb_000576_140--Hb_000317_120 Hb_000742_180 Hb_000742_180 Hb_000576_140--Hb_000742_180 Hb_003106_090 Hb_003106_090 Hb_000576_140--Hb_003106_090 Hb_016898_020 Hb_016898_020 Hb_000576_140--Hb_016898_020 Hb_000213_020 Hb_000213_020 Hb_002203_010--Hb_000213_020 Hb_000359_100 Hb_000359_100 Hb_002203_010--Hb_000359_100 Hb_002203_010--Hb_001349_050 Hb_004005_060 Hb_004005_060 Hb_002203_010--Hb_004005_060 Hb_002203_010--Hb_002818_060 Hb_000878_080 Hb_000878_080 Hb_002203_010--Hb_000878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0518641 0.871751 0.560569 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0750654 0.188494

CAGE analysis