Hb_003777_260

Information

Type -
Description -
Location Contig3777: 341798-351454
Sequence    

Annotation

kegg
ID rcu:RCOM_0959490
description hypothetical protein
nr
ID XP_012080727.1
description PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KET9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15179 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38460: 341647-343451 , PASA_asmbl_38461: 341647-343451 , PASA_asmbl_38462: 343454-345665 , PASA_asmbl_38465: 346534-347471 , PASA_asmbl_38467: 351060-351179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_260 0.0 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
2 Hb_000340_550 0.0533908882 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
3 Hb_005116_120 0.0573966455 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
4 Hb_181744_010 0.0693766346 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_002243_030 0.0796723866 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
6 Hb_001439_240 0.0826827452 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
7 Hb_005288_090 0.0848643861 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
8 Hb_001998_180 0.0878049886 - - actin binding protein, putative [Ricinus communis]
9 Hb_004109_100 0.0901581016 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
10 Hb_011849_010 0.0913583662 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
11 Hb_006520_030 0.091829505 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
12 Hb_001541_140 0.0930039506 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
13 Hb_000830_010 0.0941951545 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002374_090 0.0964669214 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
15 Hb_001969_120 0.0967223489 - - PREDICTED: plectin [Jatropha curcas]
16 Hb_005618_070 0.0977237854 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
17 Hb_001279_110 0.0982538378 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
18 Hb_015299_040 0.0995551633 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
19 Hb_000060_030 0.10012316 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
20 Hb_002053_100 0.1029164233 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003777_260 Hb_003777_260 Hb_000340_550 Hb_000340_550 Hb_003777_260--Hb_000340_550 Hb_005116_120 Hb_005116_120 Hb_003777_260--Hb_005116_120 Hb_181744_010 Hb_181744_010 Hb_003777_260--Hb_181744_010 Hb_002243_030 Hb_002243_030 Hb_003777_260--Hb_002243_030 Hb_001439_240 Hb_001439_240 Hb_003777_260--Hb_001439_240 Hb_005288_090 Hb_005288_090 Hb_003777_260--Hb_005288_090 Hb_000340_550--Hb_001439_240 Hb_000340_550--Hb_181744_010 Hb_000340_550--Hb_005288_090 Hb_002053_100 Hb_002053_100 Hb_000340_550--Hb_002053_100 Hb_000340_550--Hb_005116_120 Hb_005116_120--Hb_181744_010 Hb_005116_120--Hb_005288_090 Hb_001998_180 Hb_001998_180 Hb_005116_120--Hb_001998_180 Hb_001279_110 Hb_001279_110 Hb_005116_120--Hb_001279_110 Hb_181744_010--Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_181744_010--Hb_000060_030 Hb_000038_070 Hb_000038_070 Hb_181744_010--Hb_000038_070 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_015299_040 Hb_015299_040 Hb_002243_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_002243_030--Hb_001357_160 Hb_004109_100 Hb_004109_100 Hb_002243_030--Hb_004109_100 Hb_002170_060 Hb_002170_060 Hb_002243_030--Hb_002170_060 Hb_001439_240--Hb_002053_100 Hb_000830_010 Hb_000830_010 Hb_001439_240--Hb_000830_010 Hb_001439_240--Hb_181744_010 Hb_005276_190 Hb_005276_190 Hb_001439_240--Hb_005276_190 Hb_012395_040 Hb_012395_040 Hb_005288_090--Hb_012395_040 Hb_001257_070 Hb_001257_070 Hb_005288_090--Hb_001257_070 Hb_005288_090--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_005288_090--Hb_005618_070 Hb_000116_050 Hb_000116_050 Hb_005288_090--Hb_000116_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0101138 0.135319 5.60151 2.14342 0.00725981 0.0088668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00571962 0.0135045 0.00869404 0.44487 0.757047

CAGE analysis