Hb_005618_070

Information

Type -
Description -
Location Contig5618: 57967-64362
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10710g
description POPTRDRAFT_774612; hypothetical protein
nr
ID XP_012083808.1
description PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14122 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48827: 61575-62010 , PASA_asmbl_48828: 62087-62705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_070 0.0 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
2 Hb_001969_120 0.044690312 - - PREDICTED: plectin [Jatropha curcas]
3 Hb_012395_040 0.0531114073 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001279_110 0.0577312503 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
5 Hb_002928_150 0.0641350079 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
6 Hb_001541_140 0.0702298498 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
7 Hb_005288_090 0.0718453479 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
8 Hb_003776_050 0.072582809 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
9 Hb_003398_050 0.0744329823 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
10 Hb_000060_030 0.0763286415 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
11 Hb_001220_020 0.0828968873 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
12 Hb_119044_040 0.083708144 - - cyclin B, putative [Ricinus communis]
13 Hb_000116_050 0.08459846 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
14 Hb_001257_070 0.0850741426 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
15 Hb_011849_010 0.0860560582 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
16 Hb_000340_550 0.0869521059 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
17 Hb_080952_060 0.0899757884 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_004032_390 0.0911027899 - - CDK, putative [Ricinus communis]
19 Hb_181744_010 0.0919677844 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_005914_100 0.0924191285 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005618_070 Hb_005618_070 Hb_001969_120 Hb_001969_120 Hb_005618_070--Hb_001969_120 Hb_012395_040 Hb_012395_040 Hb_005618_070--Hb_012395_040 Hb_001279_110 Hb_001279_110 Hb_005618_070--Hb_001279_110 Hb_002928_150 Hb_002928_150 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_005288_090 Hb_005288_090 Hb_005618_070--Hb_005288_090 Hb_003776_050 Hb_003776_050 Hb_001969_120--Hb_003776_050 Hb_003398_050 Hb_003398_050 Hb_001969_120--Hb_003398_050 Hb_001969_120--Hb_001279_110 Hb_119044_040 Hb_119044_040 Hb_001969_120--Hb_119044_040 Hb_001969_120--Hb_002928_150 Hb_000116_050 Hb_000116_050 Hb_012395_040--Hb_000116_050 Hb_012395_040--Hb_001279_110 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_012395_040--Hb_000060_030 Hb_012395_040--Hb_005288_090 Hb_001279_110--Hb_000060_030 Hb_001279_110--Hb_000116_050 Hb_001279_110--Hb_119044_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_002928_150--Hb_003398_050 Hb_002928_150--Hb_003776_050 Hb_005914_100 Hb_005914_100 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_002928_150--Hb_004174_030 Hb_001541_140--Hb_012395_040 Hb_001541_140--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_001541_140--Hb_001998_180 Hb_080952_060 Hb_080952_060 Hb_001541_140--Hb_080952_060 Hb_001541_140--Hb_005288_090 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_005288_090--Hb_001257_070 Hb_005288_090--Hb_000060_030 Hb_005288_090--Hb_000116_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00807076 0.00665158 1.51396 0.544922 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0858923 0.122479

CAGE analysis