Hb_023344_100

Information

Type -
Description -
Location Contig23344: 103388-105691
Sequence    

Annotation

kegg
ID rcu:RCOM_0542020
description Cucumisin precursor, putative (EC:1.3.1.74)
nr
ID XP_012085216.1
description PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
swissprot
ID O64495
description Subtilisin-like protease SBT1.2 OS=Arabidopsis thaliana GN=SBT1.2 PE=2 SV=1
trembl
ID B9SKL8
description Cucumisin, putative OS=Ricinus communis GN=RCOM_0542020 PE=4 SV=1
Gene Ontology
ID GO:0009897
description subtilisin-like protease sdd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24527: 103541-103879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_100 0.0 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
2 Hb_002243_030 0.0651581887 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
3 Hb_015299_040 0.087619295 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
4 Hb_001357_160 0.0985543441 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004109_100 0.0985656206 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
6 Hb_158845_010 0.104247066 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
7 Hb_074240_030 0.1102716688 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
8 Hb_003777_260 0.1127334441 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
9 Hb_001856_190 0.1155166301 - - SP1L, putative [Ricinus communis]
10 Hb_000010_320 0.1159129163 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
11 Hb_003935_090 0.1181518004 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
12 Hb_054615_010 0.1232195482 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
13 Hb_004459_030 0.1235225788 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_000340_550 0.1243771714 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
15 Hb_002232_310 0.1251836908 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
16 Hb_002045_160 0.1257051837 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
17 Hb_059832_010 0.1271100215 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
18 Hb_002170_060 0.1272162961 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
19 Hb_000664_080 0.1272840564 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
20 Hb_000051_130 0.1323950607 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_023344_100 Hb_023344_100 Hb_002243_030 Hb_002243_030 Hb_023344_100--Hb_002243_030 Hb_015299_040 Hb_015299_040 Hb_023344_100--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_023344_100--Hb_001357_160 Hb_004109_100 Hb_004109_100 Hb_023344_100--Hb_004109_100 Hb_158845_010 Hb_158845_010 Hb_023344_100--Hb_158845_010 Hb_074240_030 Hb_074240_030 Hb_023344_100--Hb_074240_030 Hb_002243_030--Hb_015299_040 Hb_002243_030--Hb_001357_160 Hb_002243_030--Hb_004109_100 Hb_003777_260 Hb_003777_260 Hb_002243_030--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_002243_030--Hb_002170_060 Hb_015299_040--Hb_158845_010 Hb_000010_320 Hb_000010_320 Hb_015299_040--Hb_000010_320 Hb_015299_040--Hb_074240_030 Hb_015299_040--Hb_001357_160 Hb_054615_010 Hb_054615_010 Hb_015299_040--Hb_054615_010 Hb_001357_160--Hb_074240_030 Hb_001357_160--Hb_158845_010 Hb_001856_190 Hb_001856_190 Hb_001357_160--Hb_001856_190 Hb_001357_160--Hb_000010_320 Hb_005568_140 Hb_005568_140 Hb_004109_100--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_004109_100--Hb_002918_220 Hb_004109_100--Hb_003777_260 Hb_004109_100--Hb_002170_060 Hb_004109_100--Hb_015299_040 Hb_158845_010--Hb_000010_320 Hb_059832_010 Hb_059832_010 Hb_158845_010--Hb_059832_010 Hb_158845_010--Hb_074240_030 Hb_158845_010--Hb_054615_010 Hb_074240_030--Hb_000010_320 Hb_074240_030--Hb_001856_190 Hb_074240_030--Hb_054615_010 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00850511 0.0378871 1.99469 0.516831 0.00796102 0.0223125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.015196 0 0.072458 0.322382

CAGE analysis