Hb_005568_140

Information

Type -
Description -
Location Contig5568: 161251-166266
Sequence    

Annotation

kegg
ID rcu:RCOM_0624530
description ATP binding protein, putative
nr
ID XP_002532251.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LSS5
description Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=1 SV=1
trembl
ID B9T1Y2
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0624530 PE=4 SV=1
Gene Ontology
ID GO:0005886
description interactor of constitutive active rops 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48582: 161254-167719 , PASA_asmbl_48583: 164410-166312 , PASA_asmbl_48584: 166172-167759
cDNA
(Sanger)
(ID:Location)		 004_H03.ab1: 162922-167719

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_140 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002918_220 0.0485392982 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
3 Hb_004109_100 0.0688886968 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
4 Hb_001571_080 0.0730484635 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
5 Hb_002170_060 0.0942941353 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
6 Hb_010267_020 0.0950833071 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_004422_030 0.0997992511 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
8 Hb_001439_240 0.105542291 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
9 Hb_027337_010 0.1081793779 - - Potassium transporter, putative [Ricinus communis]
10 Hb_003992_130 0.1082256326 - - unnamed protein product [Vitis vinifera]
11 Hb_012753_150 0.1084362894 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
12 Hb_000200_270 0.1089873089 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
13 Hb_002243_030 0.1096274802 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
14 Hb_007574_020 0.1113557421 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
15 Hb_001085_160 0.1151844527 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
16 Hb_000830_010 0.1187424777 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003777_260 0.1196200051 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
18 Hb_000349_250 0.1199075419 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
19 Hb_000340_550 0.121223107 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
20 Hb_015299_040 0.1243131063 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]

Gene co-expression network

sample Hb_005568_140 Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_005568_140--Hb_002918_220 Hb_004109_100 Hb_004109_100 Hb_005568_140--Hb_004109_100 Hb_001571_080 Hb_001571_080 Hb_005568_140--Hb_001571_080 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_010267_020 Hb_010267_020 Hb_005568_140--Hb_010267_020 Hb_004422_030 Hb_004422_030 Hb_005568_140--Hb_004422_030 Hb_002918_220--Hb_004109_100 Hb_002918_220--Hb_004422_030 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_002918_220--Hb_010267_020 Hb_002243_030 Hb_002243_030 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_001085_160 Hb_001085_160 Hb_001571_080--Hb_001085_160 Hb_007237_020 Hb_007237_020 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_000027_160 Hb_000027_160 Hb_001571_080--Hb_000027_160 Hb_008643_220 Hb_008643_220 Hb_002170_060--Hb_008643_220 Hb_000664_080 Hb_000664_080 Hb_002170_060--Hb_000664_080 Hb_002170_060--Hb_002243_030 Hb_002170_060--Hb_002918_220 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_010267_020--Hb_004422_030 Hb_005695_070 Hb_005695_070 Hb_010267_020--Hb_005695_070 Hb_004225_160 Hb_004225_160 Hb_004422_030--Hb_004225_160 Hb_000083_280 Hb_000083_280 Hb_004422_030--Hb_000083_280 Hb_004422_030--Hb_001439_240 Hb_039812_010 Hb_039812_010 Hb_004422_030--Hb_039812_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351063 3.0978 31.6025 11.0785 0.158282 0.0524532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0563437 1.99265 4.58559

CAGE analysis