Hb_039812_010

Information

Type -
Description -
Location Contig39812: 711-1205
Sequence    

Annotation

kegg
ID pop:POPTR_0204s00240g
description hypothetical protein
nr
ID XP_012084474.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID U7E200
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0204s00240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039812_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_000083_280 0.0659207958 - - copper ion binding protein, putative [Ricinus communis]
3 Hb_004422_030 0.0952101773 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
4 Hb_001864_040 0.0972400307 - - PREDICTED: kinesin-1 [Jatropha curcas]
5 Hb_000316_070 0.1124086211 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
6 Hb_004459_030 0.1152630305 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
7 Hb_033152_060 0.1214676504 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
8 Hb_002473_030 0.1239915608 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
9 Hb_004963_020 0.1259058596 - - PREDICTED: patellin-4 [Populus euphratica]
10 Hb_000416_080 0.1266913972 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
11 Hb_002918_220 0.128151971 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
12 Hb_004007_080 0.1283753924 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
13 Hb_005649_050 0.1313329681 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007245_030 0.1315514205 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011849_010 0.1329138477 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
16 Hb_000527_030 0.1365488608 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
17 Hb_001168_030 0.1379300713 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
18 Hb_169753_010 0.1385214321 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
19 Hb_001564_100 0.1386116191 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
20 Hb_113974_010 0.1390189459 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_039812_010 Hb_039812_010 Hb_000083_280 Hb_000083_280 Hb_039812_010--Hb_000083_280 Hb_004422_030 Hb_004422_030 Hb_039812_010--Hb_004422_030 Hb_001864_040 Hb_001864_040 Hb_039812_010--Hb_001864_040 Hb_000316_070 Hb_000316_070 Hb_039812_010--Hb_000316_070 Hb_004459_030 Hb_004459_030 Hb_039812_010--Hb_004459_030 Hb_033152_060 Hb_033152_060 Hb_039812_010--Hb_033152_060 Hb_000083_280--Hb_004422_030 Hb_000527_030 Hb_000527_030 Hb_000083_280--Hb_000527_030 Hb_000283_090 Hb_000283_090 Hb_000083_280--Hb_000283_090 Hb_113974_010 Hb_113974_010 Hb_000083_280--Hb_113974_010 Hb_004007_080 Hb_004007_080 Hb_000083_280--Hb_004007_080 Hb_002918_220 Hb_002918_220 Hb_004422_030--Hb_002918_220 Hb_004225_160 Hb_004225_160 Hb_004422_030--Hb_004225_160 Hb_001439_240 Hb_001439_240 Hb_004422_030--Hb_001439_240 Hb_010267_020 Hb_010267_020 Hb_004422_030--Hb_010267_020 Hb_004963_020 Hb_004963_020 Hb_001864_040--Hb_004963_020 Hb_001864_040--Hb_000316_070 Hb_007558_110 Hb_007558_110 Hb_001864_040--Hb_007558_110 Hb_002473_030 Hb_002473_030 Hb_001864_040--Hb_002473_030 Hb_004635_020 Hb_004635_020 Hb_001864_040--Hb_004635_020 Hb_001864_040--Hb_033152_060 Hb_011849_010 Hb_011849_010 Hb_000316_070--Hb_011849_010 Hb_000316_070--Hb_004635_020 Hb_000316_070--Hb_004963_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_004459_030--Hb_002473_030 Hb_000032_080 Hb_000032_080 Hb_004459_030--Hb_000032_080 Hb_005649_050 Hb_005649_050 Hb_004459_030--Hb_005649_050 Hb_000664_080 Hb_000664_080 Hb_004459_030--Hb_000664_080 Hb_004459_030--Hb_004007_080 Hb_011063_030 Hb_011063_030 Hb_004459_030--Hb_011063_030 Hb_000189_350 Hb_000189_350 Hb_033152_060--Hb_000189_350 Hb_033152_060--Hb_000316_070 Hb_002205_180 Hb_002205_180 Hb_033152_060--Hb_002205_180 Hb_027905_040 Hb_027905_040 Hb_033152_060--Hb_027905_040 Hb_033152_060--Hb_004635_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116508 0.150032 3.25167 0.958033 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0892122 0.19995

CAGE analysis