Hb_000283_090

Information

Type -
Description -
Location Contig283: 109308-109927
Sequence    

Annotation

kegg
ID rcu:RCOM_0484430
description Photosystem II reaction center W protein, chloroplast precursor, putative
nr
ID XP_002531284.1
description Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZ65
description Photosystem II reaction center W protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0484430 PE=4 SV=1
Gene Ontology
ID GO:0009507
description photosystem ii reaction center w chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29599: 109319-109868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_090 0.0 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_005357_140 0.1016341233 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
3 Hb_001301_310 0.1049004584 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000083_280 0.1057260232 - - copper ion binding protein, putative [Ricinus communis]
5 Hb_004422_030 0.1072738449 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
6 Hb_000527_030 0.1092238895 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
7 Hb_004003_020 0.1108796445 - - unnamed protein product [Coffea canephora]
8 Hb_000809_220 0.1114450938 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
9 Hb_049846_010 0.1125060934 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
10 Hb_003767_030 0.1199006424 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
11 Hb_000445_320 0.1203768098 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
12 Hb_000331_300 0.1253706366 - - PREDICTED: malate synthase, glyoxysomal [Jatropha curcas]
13 Hb_004241_160 0.1256968704 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
14 Hb_004308_030 0.1257821006 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
15 Hb_000160_190 0.1268705543 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
16 Hb_003376_110 0.131678778 - - conserved hypothetical protein [Ricinus communis]
17 Hb_158845_010 0.1318030058 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
18 Hb_002121_030 0.1327629344 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
19 Hb_000397_060 0.1334633706 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
20 Hb_001377_340 0.1347866333 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]

Gene co-expression network

sample Hb_000283_090 Hb_000283_090 Hb_005357_140 Hb_005357_140 Hb_000283_090--Hb_005357_140 Hb_001301_310 Hb_001301_310 Hb_000283_090--Hb_001301_310 Hb_000083_280 Hb_000083_280 Hb_000283_090--Hb_000083_280 Hb_004422_030 Hb_004422_030 Hb_000283_090--Hb_004422_030 Hb_000527_030 Hb_000527_030 Hb_000283_090--Hb_000527_030 Hb_004003_020 Hb_004003_020 Hb_000283_090--Hb_004003_020 Hb_000397_060 Hb_000397_060 Hb_005357_140--Hb_000397_060 Hb_000139_040 Hb_000139_040 Hb_005357_140--Hb_000139_040 Hb_005357_140--Hb_001301_310 Hb_049846_010 Hb_049846_010 Hb_005357_140--Hb_049846_010 Hb_001958_040 Hb_001958_040 Hb_005357_140--Hb_001958_040 Hb_001301_310--Hb_001958_040 Hb_001301_310--Hb_000397_060 Hb_004128_150 Hb_004128_150 Hb_001301_310--Hb_004128_150 Hb_002053_100 Hb_002053_100 Hb_001301_310--Hb_002053_100 Hb_000073_040 Hb_000073_040 Hb_001301_310--Hb_000073_040 Hb_039812_010 Hb_039812_010 Hb_000083_280--Hb_039812_010 Hb_000083_280--Hb_004422_030 Hb_000083_280--Hb_000527_030 Hb_113974_010 Hb_113974_010 Hb_000083_280--Hb_113974_010 Hb_004007_080 Hb_004007_080 Hb_000083_280--Hb_004007_080 Hb_002918_220 Hb_002918_220 Hb_004422_030--Hb_002918_220 Hb_004225_160 Hb_004225_160 Hb_004422_030--Hb_004225_160 Hb_001439_240 Hb_001439_240 Hb_004422_030--Hb_001439_240 Hb_004422_030--Hb_039812_010 Hb_010267_020 Hb_010267_020 Hb_004422_030--Hb_010267_020 Hb_000527_030--Hb_004007_080 Hb_002453_040 Hb_002453_040 Hb_000527_030--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010 Hb_004241_160 Hb_004241_160 Hb_000527_030--Hb_004241_160 Hb_054615_010 Hb_054615_010 Hb_004003_020--Hb_054615_010 Hb_002121_030 Hb_002121_030 Hb_004003_020--Hb_002121_030 Hb_000051_150 Hb_000051_150 Hb_004003_020--Hb_000051_150 Hb_000010_320 Hb_000010_320 Hb_004003_020--Hb_000010_320 Hb_000445_320 Hb_000445_320 Hb_004003_020--Hb_000445_320 Hb_158845_010 Hb_158845_010 Hb_004003_020--Hb_158845_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250237 3.42551 50.4617 18.271 0 0.0525017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136911 0 0 0 6.21632

CAGE analysis