Hb_113974_010

Information

Type -
Description -
Location Contig113974: 4465-6512
Sequence    

Annotation

kegg
ID rcu:RCOM_0381660
description DNA binding protein, putative
nr
ID XP_002528575.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID B9SRF6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0381660 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113974_010 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_003641_040 0.0912689105 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
3 Hb_000160_110 0.0948315961 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
4 Hb_004241_160 0.1075518118 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
5 Hb_000083_280 0.1077018869 - - copper ion binding protein, putative [Ricinus communis]
6 Hb_008226_050 0.1147205625 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
7 Hb_000527_030 0.1167746325 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
8 Hb_005918_020 0.1226380717 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
9 Hb_001168_030 0.1292479001 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
10 Hb_002453_040 0.130266593 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
11 Hb_005914_100 0.1310093137 - - conserved hypothetical protein [Ricinus communis]
12 Hb_130222_010 0.1321380388 - - hypothetical protein RCOM_1272620 [Ricinus communis]
13 Hb_103339_010 0.1331326106 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000675_130 0.1335492347 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
15 Hb_000283_090 0.1350566954 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_011859_010 0.1352268663 - - hypothetical protein VITISV_027923 [Vitis vinifera]
17 Hb_001123_180 0.1354316139 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001969_030 0.1383658612 - - conserved hypothetical protein [Ricinus communis]
19 Hb_056196_020 0.1388949882 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
20 Hb_039812_010 0.1390189459 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]

Gene co-expression network

sample Hb_113974_010 Hb_113974_010 Hb_003641_040 Hb_003641_040 Hb_113974_010--Hb_003641_040 Hb_000160_110 Hb_000160_110 Hb_113974_010--Hb_000160_110 Hb_004241_160 Hb_004241_160 Hb_113974_010--Hb_004241_160 Hb_000083_280 Hb_000083_280 Hb_113974_010--Hb_000083_280 Hb_008226_050 Hb_008226_050 Hb_113974_010--Hb_008226_050 Hb_000527_030 Hb_000527_030 Hb_113974_010--Hb_000527_030 Hb_000675_130 Hb_000675_130 Hb_003641_040--Hb_000675_130 Hb_001969_030 Hb_001969_030 Hb_003641_040--Hb_001969_030 Hb_003641_040--Hb_008226_050 Hb_000853_020 Hb_000853_020 Hb_003641_040--Hb_000853_020 Hb_000394_120 Hb_000394_120 Hb_003641_040--Hb_000394_120 Hb_001123_180 Hb_001123_180 Hb_003641_040--Hb_001123_180 Hb_000160_110--Hb_004241_160 Hb_000160_110--Hb_003641_040 Hb_000160_110--Hb_000527_030 Hb_002837_120 Hb_002837_120 Hb_000160_110--Hb_002837_120 Hb_006573_310 Hb_006573_310 Hb_000160_110--Hb_006573_310 Hb_004241_160--Hb_008226_050 Hb_004241_160--Hb_006573_310 Hb_005914_100 Hb_005914_100 Hb_004241_160--Hb_005914_100 Hb_004241_160--Hb_000527_030 Hb_004241_160--Hb_003641_040 Hb_039812_010 Hb_039812_010 Hb_000083_280--Hb_039812_010 Hb_004422_030 Hb_004422_030 Hb_000083_280--Hb_004422_030 Hb_000083_280--Hb_000527_030 Hb_000283_090 Hb_000283_090 Hb_000083_280--Hb_000283_090 Hb_004007_080 Hb_004007_080 Hb_000083_280--Hb_004007_080 Hb_008226_050--Hb_000675_130 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_000527_030--Hb_004007_080 Hb_002453_040 Hb_002453_040 Hb_000527_030--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270413 0.0678846 2.33413 0.811639 0.0253587 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0986603

CAGE analysis