Hb_000160_110

Information

Type -
Description -
Location Contig160: 123861-124325
Sequence    

Annotation

kegg
ID vvi:100253584
description uncharacterized LOC100253584
nr
ID XP_002271387.1
description PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HSM6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14312: 125243-125438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_110 0.0 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
2 Hb_004241_160 0.0724076943 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
3 Hb_003641_040 0.0902157395 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
4 Hb_113974_010 0.0948315961 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000527_030 0.0983871612 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
6 Hb_002837_120 0.1003620007 - - PREDICTED: legumin A-like [Jatropha curcas]
7 Hb_006573_310 0.1054112915 - - Tellurite resistance protein tehA, putative [Ricinus communis]
8 Hb_001969_030 0.1061947816 - - conserved hypothetical protein [Ricinus communis]
9 Hb_056196_020 0.110623211 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
10 Hb_108744_010 0.1147469014 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_074660_010 0.1157959063 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_005914_100 0.1176132128 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008226_050 0.1186680492 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
14 Hb_001190_030 0.1193034228 - - hypothetical protein VITISV_017115 [Vitis vinifera]
15 Hb_004097_030 0.1218108661 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
16 Hb_152528_010 0.1219572282 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_169136_010 0.1226149038 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000853_020 0.1228684429 - - PREDICTED: endoglucanase 17 [Populus euphratica]
19 Hb_000756_030 0.1236117151 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_002453_040 0.1253385168 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_110 Hb_000160_110 Hb_004241_160 Hb_004241_160 Hb_000160_110--Hb_004241_160 Hb_003641_040 Hb_003641_040 Hb_000160_110--Hb_003641_040 Hb_113974_010 Hb_113974_010 Hb_000160_110--Hb_113974_010 Hb_000527_030 Hb_000527_030 Hb_000160_110--Hb_000527_030 Hb_002837_120 Hb_002837_120 Hb_000160_110--Hb_002837_120 Hb_006573_310 Hb_006573_310 Hb_000160_110--Hb_006573_310 Hb_008226_050 Hb_008226_050 Hb_004241_160--Hb_008226_050 Hb_004241_160--Hb_006573_310 Hb_005914_100 Hb_005914_100 Hb_004241_160--Hb_005914_100 Hb_004241_160--Hb_000527_030 Hb_004241_160--Hb_003641_040 Hb_000675_130 Hb_000675_130 Hb_003641_040--Hb_000675_130 Hb_001969_030 Hb_001969_030 Hb_003641_040--Hb_001969_030 Hb_003641_040--Hb_008226_050 Hb_000853_020 Hb_000853_020 Hb_003641_040--Hb_000853_020 Hb_000394_120 Hb_000394_120 Hb_003641_040--Hb_000394_120 Hb_001123_180 Hb_001123_180 Hb_003641_040--Hb_001123_180 Hb_113974_010--Hb_003641_040 Hb_113974_010--Hb_004241_160 Hb_000083_280 Hb_000083_280 Hb_113974_010--Hb_000083_280 Hb_113974_010--Hb_008226_050 Hb_113974_010--Hb_000527_030 Hb_004007_080 Hb_004007_080 Hb_000527_030--Hb_004007_080 Hb_002453_040 Hb_002453_040 Hb_000527_030--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010 Hb_000527_030--Hb_000083_280 Hb_002837_120--Hb_001969_030 Hb_056196_020 Hb_056196_020 Hb_002837_120--Hb_056196_020 Hb_002837_120--Hb_000853_020 Hb_169136_010 Hb_169136_010 Hb_002837_120--Hb_169136_010 Hb_004174_030 Hb_004174_030 Hb_002837_120--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_002837_120--Hb_004097_030 Hb_004774_080 Hb_004774_080 Hb_006573_310--Hb_004774_080 Hb_007245_030 Hb_007245_030 Hb_006573_310--Hb_007245_030 Hb_006573_310--Hb_005914_100 Hb_078448_010 Hb_078448_010 Hb_006573_310--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_006573_310--Hb_000527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.14217 30.4581 11.487 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.875315

CAGE analysis