Hb_007558_110

Information

Type -
Description -
Location Contig7558: 78981-79761
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10990g
description POPTRDRAFT_762591; hypothetical protein
nr
ID XP_012091037.1
description PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00644 PE=4 SV=1
Gene Ontology
ID GO:0048438
description high mobility group b protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57037: 74793-78025 , PASA_asmbl_57038: 78965-79096 , PASA_asmbl_57039: 79494-79931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_110 0.0 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
2 Hb_001864_040 0.0821107309 - - PREDICTED: kinesin-1 [Jatropha curcas]
3 Hb_000035_190 0.10118961 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001454_180 0.1044580934 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
5 Hb_162378_020 0.1158222706 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
6 Hb_004963_020 0.1182897112 - - PREDICTED: patellin-4 [Populus euphratica]
7 Hb_011063_030 0.1202737023 - - protein with unknown function [Ricinus communis]
8 Hb_000316_070 0.1248284931 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
9 Hb_010021_060 0.1250823255 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
10 Hb_002686_070 0.1252025676 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004032_390 0.1259671193 - - CDK, putative [Ricinus communis]
12 Hb_002473_030 0.1263854319 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
13 Hb_004635_020 0.1265045544 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
14 Hb_000189_350 0.1274777401 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
15 Hb_001699_070 0.1301319582 - - conserved hypothetical protein [Ricinus communis]
16 Hb_119044_040 0.1324393821 - - cyclin B, putative [Ricinus communis]
17 Hb_000441_210 0.1336777748 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
18 Hb_000032_080 0.1340007258 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
19 Hb_064396_010 0.1344215136 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001220_020 0.1346914708 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]

Gene co-expression network

sample Hb_007558_110 Hb_007558_110 Hb_001864_040 Hb_001864_040 Hb_007558_110--Hb_001864_040 Hb_000035_190 Hb_000035_190 Hb_007558_110--Hb_000035_190 Hb_001454_180 Hb_001454_180 Hb_007558_110--Hb_001454_180 Hb_162378_020 Hb_162378_020 Hb_007558_110--Hb_162378_020 Hb_004963_020 Hb_004963_020 Hb_007558_110--Hb_004963_020 Hb_011063_030 Hb_011063_030 Hb_007558_110--Hb_011063_030 Hb_001864_040--Hb_004963_020 Hb_000316_070 Hb_000316_070 Hb_001864_040--Hb_000316_070 Hb_002473_030 Hb_002473_030 Hb_001864_040--Hb_002473_030 Hb_004635_020 Hb_004635_020 Hb_001864_040--Hb_004635_020 Hb_033152_060 Hb_033152_060 Hb_001864_040--Hb_033152_060 Hb_003018_210 Hb_003018_210 Hb_000035_190--Hb_003018_210 Hb_001699_070 Hb_001699_070 Hb_000035_190--Hb_001699_070 Hb_003398_050 Hb_003398_050 Hb_000035_190--Hb_003398_050 Hb_003368_070 Hb_003368_070 Hb_000035_190--Hb_003368_070 Hb_000035_190--Hb_162378_020 Hb_001220_020 Hb_001220_020 Hb_000035_190--Hb_001220_020 Hb_001454_180--Hb_004963_020 Hb_010021_060 Hb_010021_060 Hb_001454_180--Hb_010021_060 Hb_000441_210 Hb_000441_210 Hb_001454_180--Hb_000441_210 Hb_000028_530 Hb_000028_530 Hb_001454_180--Hb_000028_530 Hb_001454_180--Hb_002473_030 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_004963_020--Hb_002473_030 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_001235_040 Hb_001235_040 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_000032_080 Hb_011063_030--Hb_001220_020 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578094 0.289648 15.3926 4.36534 0.0782891 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0966608 0 0 1.3063 0.295408

CAGE analysis