Hb_010021_060

Information

Type -
Description -
Location Contig10021: 61095-72340
Sequence    

Annotation

kegg
ID rcu:RCOM_1586490
description ATP binding protein, putative
nr
ID XP_012068175.1
description PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
swissprot
ID Q6RT24
description Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
trembl
ID A0A067L2X9
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_15995 PE=3 SV=1
Gene Ontology
ID GO:0005871
description centromere-associated protein e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00262: 61238-62407 , PASA_asmbl_00263: 62632-63238 , PASA_asmbl_00264: 64474-67855 , PASA_asmbl_00265: 67965-69021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010021_060 0.0 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
2 Hb_001454_180 0.0941481857 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
3 Hb_002837_030 0.1054961707 - - conserved hypothetical protein [Ricinus communis]
4 Hb_162378_020 0.1065494638 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
5 Hb_011063_030 0.1065893454 - - protein with unknown function [Ricinus communis]
6 Hb_002686_070 0.1088892612 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007044_260 0.1092857467 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
8 Hb_004963_020 0.1098532863 - - PREDICTED: patellin-4 [Populus euphratica]
9 Hb_004032_390 0.1173810639 - - CDK, putative [Ricinus communis]
10 Hb_000032_080 0.121805828 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
11 Hb_004635_020 0.122612103 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_000028_530 0.1229996088 - - Protein regulator of cytokinesis, putative [Ricinus communis]
13 Hb_007558_110 0.1250823255 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
14 Hb_000316_070 0.1253808059 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
15 Hb_002473_030 0.1257323305 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
16 Hb_064396_010 0.1259041941 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000265_100 0.1269578778 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
18 Hb_001220_020 0.1288408342 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
19 Hb_001864_040 0.1315087546 - - PREDICTED: kinesin-1 [Jatropha curcas]
20 Hb_119044_040 0.1317457759 - - cyclin B, putative [Ricinus communis]

Gene co-expression network

sample Hb_010021_060 Hb_010021_060 Hb_001454_180 Hb_001454_180 Hb_010021_060--Hb_001454_180 Hb_002837_030 Hb_002837_030 Hb_010021_060--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_010021_060--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_010021_060--Hb_011063_030 Hb_002686_070 Hb_002686_070 Hb_010021_060--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_010021_060--Hb_007044_260 Hb_004963_020 Hb_004963_020 Hb_001454_180--Hb_004963_020 Hb_000441_210 Hb_000441_210 Hb_001454_180--Hb_000441_210 Hb_000028_530 Hb_000028_530 Hb_001454_180--Hb_000028_530 Hb_007558_110 Hb_007558_110 Hb_001454_180--Hb_007558_110 Hb_002473_030 Hb_002473_030 Hb_001454_180--Hb_002473_030 Hb_002837_030--Hb_004963_020 Hb_002837_030--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_002837_030--Hb_005649_050 Hb_004032_390 Hb_004032_390 Hb_002837_030--Hb_004032_390 Hb_001564_100 Hb_001564_100 Hb_002837_030--Hb_001564_100 Hb_002837_030--Hb_162378_020 Hb_001220_020 Hb_001220_020 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_162378_020--Hb_002686_070 Hb_001235_040 Hb_001235_040 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_000032_080 Hb_011063_030--Hb_001220_020 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020 Hb_002686_070--Hb_064396_010 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020 Hb_002686_070--Hb_000032_080 Hb_000358_010 Hb_000358_010 Hb_007044_260--Hb_000358_010 Hb_004631_040 Hb_004631_040 Hb_007044_260--Hb_004631_040 Hb_002874_010 Hb_002874_010 Hb_007044_260--Hb_002874_010 Hb_007044_260--Hb_000032_080 Hb_007044_260--Hb_162378_020 Hb_007044_260--Hb_002686_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351203 0.141238 9.80688 2.49723 0.27824 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.03381 0.0399074 0 0.924161 0.311316

CAGE analysis