Hb_000358_010

Information

Type -
Description -
Location Contig358: 22302-23337
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21660g
description POPTRDRAFT_815202; basic blue copper family protein
nr
ID XP_011014751.1
description PREDICTED: basic blue protein [Populus euphratica]
swissprot
ID Q8LG89
description Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2
trembl
ID B9GEY2
description Basic blue copper family protein OS=Populus trichocarpa GN=POPTR_0001s21660g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36871: 22437-23335
cDNA
(Sanger)
(ID:Location)		 005_D07.ab1: 22437-23140 , 011_A17.ab1: 22442-23271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_010 0.0 - - PREDICTED: basic blue protein [Populus euphratica]
2 Hb_007044_260 0.0631261449 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
3 Hb_006316_090 0.0642152879 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_001076_010 0.0677800428 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
5 Hb_002874_010 0.0748377578 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
6 Hb_001769_150 0.0801452388 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
7 Hb_000103_460 0.0851081604 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
8 Hb_004631_040 0.0980449891 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
9 Hb_002686_070 0.1107919797 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000227_020 0.1147843519 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
11 Hb_000032_080 0.1171019118 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
12 Hb_001369_550 0.1187887561 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_036182_010 0.1192546474 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
14 Hb_064396_010 0.1222903074 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_119044_040 0.123727504 - - cyclin B, putative [Ricinus communis]
16 Hb_162378_020 0.1244514026 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
17 Hb_000085_360 0.1259137973 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
18 Hb_000030_080 0.1262803878 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
19 Hb_004592_030 0.1287725375 - - unknown [Lotus japonicus]
20 Hb_004197_020 0.1289633709 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000358_010 Hb_000358_010 Hb_007044_260 Hb_007044_260 Hb_000358_010--Hb_007044_260 Hb_006316_090 Hb_006316_090 Hb_000358_010--Hb_006316_090 Hb_001076_010 Hb_001076_010 Hb_000358_010--Hb_001076_010 Hb_002874_010 Hb_002874_010 Hb_000358_010--Hb_002874_010 Hb_001769_150 Hb_001769_150 Hb_000358_010--Hb_001769_150 Hb_000103_460 Hb_000103_460 Hb_000358_010--Hb_000103_460 Hb_004631_040 Hb_004631_040 Hb_007044_260--Hb_004631_040 Hb_007044_260--Hb_002874_010 Hb_000032_080 Hb_000032_080 Hb_007044_260--Hb_000032_080 Hb_162378_020 Hb_162378_020 Hb_007044_260--Hb_162378_020 Hb_002686_070 Hb_002686_070 Hb_007044_260--Hb_002686_070 Hb_006316_090--Hb_000103_460 Hb_006316_090--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_001076_010--Hb_002874_010 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_001076_010--Hb_000103_460 Hb_002874_010--Hb_004631_040 Hb_000085_360 Hb_000085_360 Hb_002874_010--Hb_000085_360 Hb_119044_040 Hb_119044_040 Hb_002874_010--Hb_119044_040 Hb_036182_010 Hb_036182_010 Hb_001769_150--Hb_036182_010 Hb_001769_150--Hb_006316_090 Hb_001769_150--Hb_007044_260 Hb_001769_150--Hb_001076_010 Hb_006120_140 Hb_006120_140 Hb_001769_150--Hb_006120_140 Hb_000103_460--Hb_001369_550 Hb_000103_460--Hb_002874_010 Hb_005306_030 Hb_005306_030 Hb_000103_460--Hb_005306_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.819018 56.0666 15.895 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0715597 0 11.3418 2.65949

CAGE analysis