Hb_036182_010

Information

Type -
Description -
Location Contig36182: 942-1423
Sequence    

Annotation

kegg
ID pop:POPTR_0473s00220g
description hypothetical protein
nr
ID XP_006387932.1
description hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
swissprot
ID Q9ZNS4
description Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=PRB1 PE=2 SV=1
trembl
ID U7E120
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0473s00220g PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036182_010 0.0 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
2 Hb_001769_150 0.0887138948 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
3 Hb_000621_100 0.1068987542 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006120_140 0.116657986 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
5 Hb_000358_010 0.1192546474 - - PREDICTED: basic blue protein [Populus euphratica]
6 Hb_006316_090 0.1248298635 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_001076_010 0.1252398937 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
8 Hb_001890_040 0.1327425564 - - receptor-kinase, putative [Ricinus communis]
9 Hb_000321_040 0.1328998564 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
10 Hb_003549_010 0.1364751288 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
11 Hb_028013_030 0.1366576772 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_173764_010 0.1445586565 - - protein binding protein, putative [Ricinus communis]
13 Hb_002874_010 0.146615469 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
14 Hb_007044_260 0.1482886825 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
15 Hb_001366_380 0.1498815124 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
16 Hb_000000_040 0.1533837167 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
17 Hb_004197_020 0.1563422745 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
18 Hb_010369_020 0.1566660365 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
19 Hb_020273_020 0.1571303215 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000552_030 0.1573325127 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_036182_010 Hb_036182_010 Hb_001769_150 Hb_001769_150 Hb_036182_010--Hb_001769_150 Hb_000621_100 Hb_000621_100 Hb_036182_010--Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_036182_010--Hb_006120_140 Hb_000358_010 Hb_000358_010 Hb_036182_010--Hb_000358_010 Hb_006316_090 Hb_006316_090 Hb_036182_010--Hb_006316_090 Hb_001076_010 Hb_001076_010 Hb_036182_010--Hb_001076_010 Hb_001769_150--Hb_000358_010 Hb_001769_150--Hb_006316_090 Hb_007044_260 Hb_007044_260 Hb_001769_150--Hb_007044_260 Hb_001769_150--Hb_001076_010 Hb_001769_150--Hb_006120_140 Hb_000621_100--Hb_006120_140 Hb_000000_040 Hb_000000_040 Hb_000621_100--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_000321_040 Hb_000321_040 Hb_000621_100--Hb_000321_040 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_005066_050 Hb_005066_050 Hb_000621_100--Hb_005066_050 Hb_006120_140--Hb_000000_040 Hb_020273_020 Hb_020273_020 Hb_006120_140--Hb_020273_020 Hb_006120_140--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_006120_140--Hb_001890_040 Hb_006120_140--Hb_005066_050 Hb_000358_010--Hb_007044_260 Hb_000358_010--Hb_006316_090 Hb_000358_010--Hb_001076_010 Hb_002874_010 Hb_002874_010 Hb_000358_010--Hb_002874_010 Hb_000103_460 Hb_000103_460 Hb_000358_010--Hb_000103_460 Hb_006316_090--Hb_000103_460 Hb_006316_090--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_001076_010--Hb_002874_010 Hb_004631_040 Hb_004631_040 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_001076_010--Hb_000103_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 86.7335 26.6748 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.60953 0.159593 0 25.6261 1.39767

CAGE analysis