Hb_001890_040

Information

Type -
Description -
Location Contig1890: 21884-32861
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID Q9LZV7
description Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana GN=PXC2 PE=2 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18741: 27733-34369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001890_040 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_028013_030 0.0249514298 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_006120_140 0.0820531009 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
4 Hb_020273_020 0.083889569 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000321_040 0.0919354986 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
6 Hb_000175_210 0.1087914844 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_000000_040 0.1161706806 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
8 Hb_000621_100 0.1174240834 - - conserved hypothetical protein [Ricinus communis]
9 Hb_036182_010 0.1327425564 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
10 Hb_001769_150 0.135829123 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
11 Hb_003549_010 0.1497863503 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
12 Hb_002805_260 0.152200105 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027028_010 0.1662855975 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
14 Hb_173764_010 0.1710378316 - - protein binding protein, putative [Ricinus communis]
15 Hb_000552_030 0.1762424415 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
16 Hb_000358_010 0.1787152925 - - PREDICTED: basic blue protein [Populus euphratica]
17 Hb_007951_080 0.1794520714 - - lactoylglutathione lyase, putative [Ricinus communis]
18 Hb_001476_030 0.1803041785 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
19 Hb_005066_050 0.1812752497 - - -
20 Hb_000679_280 0.1866017312 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]

Gene co-expression network

sample Hb_001890_040 Hb_001890_040 Hb_028013_030 Hb_028013_030 Hb_001890_040--Hb_028013_030 Hb_006120_140 Hb_006120_140 Hb_001890_040--Hb_006120_140 Hb_020273_020 Hb_020273_020 Hb_001890_040--Hb_020273_020 Hb_000321_040 Hb_000321_040 Hb_001890_040--Hb_000321_040 Hb_000175_210 Hb_000175_210 Hb_001890_040--Hb_000175_210 Hb_000000_040 Hb_000000_040 Hb_001890_040--Hb_000000_040 Hb_028013_030--Hb_006120_140 Hb_028013_030--Hb_020273_020 Hb_028013_030--Hb_000321_040 Hb_028013_030--Hb_000175_210 Hb_000621_100 Hb_000621_100 Hb_028013_030--Hb_000621_100 Hb_006120_140--Hb_000621_100 Hb_006120_140--Hb_000000_040 Hb_006120_140--Hb_020273_020 Hb_006120_140--Hb_000321_040 Hb_005066_050 Hb_005066_050 Hb_006120_140--Hb_005066_050 Hb_020273_020--Hb_000000_040 Hb_020273_020--Hb_000175_210 Hb_020273_020--Hb_000321_040 Hb_020273_020--Hb_000621_100 Hb_000321_040--Hb_000000_040 Hb_000321_040--Hb_000621_100 Hb_000175_210--Hb_000000_040 Hb_124302_010 Hb_124302_010 Hb_000175_210--Hb_124302_010 Hb_000175_210--Hb_006120_140 Hb_000000_040--Hb_005066_050 Hb_000000_040--Hb_000621_100 Hb_008725_110 Hb_008725_110 Hb_000000_040--Hb_008725_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.259099 0.0403004 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0696826 0

CAGE analysis