Hb_008725_110

Information

Type -
Description -
Location Contig8725: 72884-73399
Sequence    

Annotation

kegg
ID rcu:RCOM_1348220
description nutrient reservoir, putative
nr
ID XP_012083797.1
description PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13988 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_110 0.0 - - PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
2 Hb_000000_040 0.0888716316 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
3 Hb_005066_050 0.0951696538 - - -
4 Hb_001235_040 0.1109942454 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
5 Hb_020273_020 0.1150433202 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_124302_010 0.1210828468 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
7 Hb_000084_230 0.1248562531 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
8 Hb_006788_130 0.1261316359 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
9 Hb_000984_230 0.1340259623 - - -
10 Hb_011063_030 0.1342001171 - - protein with unknown function [Ricinus communis]
11 Hb_006120_140 0.1386676642 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
12 Hb_005141_020 0.1397576776 - - laccase, putative [Ricinus communis]
13 Hb_000025_770 0.139988494 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_032223_010 0.1408629811 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_000227_020 0.1439036511 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
16 Hb_061361_010 0.1454140987 - - kinase, putative [Ricinus communis]
17 Hb_162378_020 0.1475298774 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
18 Hb_004722_050 0.152547552 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
19 Hb_000514_010 0.1528635713 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
20 Hb_001926_050 0.1529156393 - - PREDICTED: peroxidase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_110 Hb_008725_110 Hb_000000_040 Hb_000000_040 Hb_008725_110--Hb_000000_040 Hb_005066_050 Hb_005066_050 Hb_008725_110--Hb_005066_050 Hb_001235_040 Hb_001235_040 Hb_008725_110--Hb_001235_040 Hb_020273_020 Hb_020273_020 Hb_008725_110--Hb_020273_020 Hb_124302_010 Hb_124302_010 Hb_008725_110--Hb_124302_010 Hb_000084_230 Hb_000084_230 Hb_008725_110--Hb_000084_230 Hb_000000_040--Hb_020273_020 Hb_006120_140 Hb_006120_140 Hb_000000_040--Hb_006120_140 Hb_000000_040--Hb_005066_050 Hb_000621_100 Hb_000621_100 Hb_000000_040--Hb_000621_100 Hb_000321_040 Hb_000321_040 Hb_000000_040--Hb_000321_040 Hb_000025_770 Hb_000025_770 Hb_005066_050--Hb_000025_770 Hb_061361_010 Hb_061361_010 Hb_005066_050--Hb_061361_010 Hb_005066_050--Hb_000621_100 Hb_001205_280 Hb_001205_280 Hb_005066_050--Hb_001205_280 Hb_006788_130 Hb_006788_130 Hb_001235_040--Hb_006788_130 Hb_001235_040--Hb_000084_230 Hb_011063_030 Hb_011063_030 Hb_001235_040--Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_001235_040--Hb_162378_020 Hb_001220_020 Hb_001220_020 Hb_001235_040--Hb_001220_020 Hb_001564_100 Hb_001564_100 Hb_001235_040--Hb_001564_100 Hb_020273_020--Hb_006120_140 Hb_000175_210 Hb_000175_210 Hb_020273_020--Hb_000175_210 Hb_020273_020--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_020273_020--Hb_001890_040 Hb_020273_020--Hb_000621_100 Hb_032223_010 Hb_032223_010 Hb_124302_010--Hb_032223_010 Hb_010672_040 Hb_010672_040 Hb_124302_010--Hb_010672_040 Hb_003147_020 Hb_003147_020 Hb_124302_010--Hb_003147_020 Hb_124302_010--Hb_000175_210 Hb_000984_230 Hb_000984_230 Hb_124302_010--Hb_000984_230 Hb_000084_230--Hb_006788_130 Hb_000084_230--Hb_001564_100 Hb_004174_030 Hb_004174_030 Hb_000084_230--Hb_004174_030 Hb_000084_230--Hb_001220_020 Hb_028995_020 Hb_028995_020 Hb_000084_230--Hb_028995_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.737396 0.128466 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0415285 0

CAGE analysis