Hb_032223_010

Information

Type -
Description -
Location Contig32223: 4444-5357
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22290g
description POPTRDRAFT_561446; alcohol dehydroge family protein
nr
ID XP_012066838.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067LCW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02813 PE=4 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34124: 4399-5566
cDNA
(Sanger)
(ID:Location)		 034_O22.ab1: 4399-5349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032223_010 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_012573_060 0.0725528015 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
3 Hb_000680_080 0.0731198489 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
4 Hb_022929_010 0.0732053707 - - zinc/iron transporter, putative [Ricinus communis]
5 Hb_002030_140 0.0734755749 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
6 Hb_014109_030 0.0747832578 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
7 Hb_001546_100 0.0749000894 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
8 Hb_000844_120 0.0755523914 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
9 Hb_003994_210 0.0757295397 - - zinc finger protein, putative [Ricinus communis]
10 Hb_004447_040 0.076199034 - - cyclin d, putative [Ricinus communis]
11 Hb_000500_380 0.0802111054 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
12 Hb_004744_030 0.080506423 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_046150_010 0.0818209715 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
14 Hb_002186_150 0.0818367799 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
15 Hb_011846_020 0.0827042439 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
16 Hb_000077_430 0.0832472788 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
17 Hb_021622_010 0.0852572261 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
18 Hb_002837_010 0.0855805934 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
19 Hb_000212_170 0.0863985259 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
20 Hb_013849_010 0.0882017836 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_032223_010 Hb_032223_010 Hb_012573_060 Hb_012573_060 Hb_032223_010--Hb_012573_060 Hb_000680_080 Hb_000680_080 Hb_032223_010--Hb_000680_080 Hb_022929_010 Hb_022929_010 Hb_032223_010--Hb_022929_010 Hb_002030_140 Hb_002030_140 Hb_032223_010--Hb_002030_140 Hb_014109_030 Hb_014109_030 Hb_032223_010--Hb_014109_030 Hb_001546_100 Hb_001546_100 Hb_032223_010--Hb_001546_100 Hb_012573_060--Hb_000680_080 Hb_012573_060--Hb_022929_010 Hb_012573_060--Hb_002030_140 Hb_012573_060--Hb_001546_100 Hb_012573_060--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_012573_060--Hb_000844_120 Hb_000680_080--Hb_022929_010 Hb_000680_080--Hb_002030_140 Hb_000680_080--Hb_001546_100 Hb_000680_080--Hb_014109_030 Hb_000680_080--Hb_000844_120 Hb_022929_010--Hb_002030_140 Hb_022929_010--Hb_001546_100 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_002030_140--Hb_001546_100 Hb_002030_140--Hb_014109_030 Hb_002030_140--Hb_000844_120 Hb_014109_030--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_014109_030--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_014109_030--Hb_004447_040 Hb_000500_380 Hb_000500_380 Hb_014109_030--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.99467 0.306321 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449436 0

CAGE analysis