Hb_003147_020

Information

Type -
Description -
Location Contig3147: 19835-22139
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07690g
description POPTRDRAFT_573862; hypothetical protein
nr
ID XP_002325384.1
description hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
swissprot
ID Q09117
description Bark storage protein B OS=Populus deltoides GN=BSP PE=1 SV=1
trembl
ID A9PG61
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s07690g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003147_020 0.0 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
2 Hb_003411_080 0.104223378 - - conserved hypothetical protein [Ricinus communis]
3 Hb_149407_010 0.1060695956 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
4 Hb_002028_230 0.1091976141 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_162008_030 0.1132417663 - - cytochrome p450 [Ageratina adenophora]
6 Hb_029879_040 0.1176994478 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
7 Hb_000129_060 0.1207380909 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
8 Hb_004019_130 0.1236568705 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
9 Hb_124302_010 0.1250027875 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
10 Hb_000206_080 0.1273927596 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
11 Hb_010672_040 0.1280335657 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
12 Hb_032223_010 0.1281310155 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
13 Hb_078641_020 0.131280249 - - Pectinesterase-2 precursor, putative [Ricinus communis]
14 Hb_010916_010 0.1318300926 - - terpene synthase [Populus trichocarpa]
15 Hb_121680_010 0.1328491285 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
16 Hb_003398_110 0.1355765687 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
17 Hb_007157_050 0.1365918873 - - hypothetical protein RCOM_0711500 [Ricinus communis]
18 Hb_000006_020 0.136890762 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000015_240 0.136890762 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000016_090 0.136890762 - - -

Gene co-expression network

sample Hb_003147_020 Hb_003147_020 Hb_003411_080 Hb_003411_080 Hb_003147_020--Hb_003411_080 Hb_149407_010 Hb_149407_010 Hb_003147_020--Hb_149407_010 Hb_002028_230 Hb_002028_230 Hb_003147_020--Hb_002028_230 Hb_162008_030 Hb_162008_030 Hb_003147_020--Hb_162008_030 Hb_029879_040 Hb_029879_040 Hb_003147_020--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_003147_020--Hb_000129_060 Hb_003411_080--Hb_002028_230 Hb_000206_080 Hb_000206_080 Hb_003411_080--Hb_000206_080 Hb_003411_080--Hb_149407_010 Hb_003411_080--Hb_162008_030 Hb_003411_080--Hb_000129_060 Hb_003411_080--Hb_029879_040 Hb_149407_010--Hb_162008_030 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_149407_010--Hb_004019_130 Hb_149407_010--Hb_002028_230 Hb_002028_230--Hb_162008_030 Hb_002028_230--Hb_000129_060 Hb_002028_230--Hb_004019_130 Hb_002028_230--Hb_029879_040 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_029879_040 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_029879_040--Hb_000129_060 Hb_029879_040--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_001546_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0193777 6.50061 0.104469 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.125747 0

CAGE analysis