Hb_006120_140

Information

Type -
Description -
Location Contig6120: 81081-83960
Sequence    

Annotation

kegg
ID rcu:RCOM_1002050
description gibberellin 2-oxidase, putative (EC:1.14.11.23)
nr
ID XP_012084136.1
description PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
swissprot
ID Q9XHM5
description Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1
trembl
ID A0A067JVQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19047 PE=3 SV=1
Gene Ontology
ID GO:0016020
description gibberellin 2-beta-dioxygenase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_140 0.0 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
2 Hb_000621_100 0.0465388695 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000000_040 0.0510536483 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
4 Hb_020273_020 0.0587966205 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000321_040 0.0638645029 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
6 Hb_001890_040 0.0820531009 - - receptor-kinase, putative [Ricinus communis]
7 Hb_005066_050 0.1014078054 - - -
8 Hb_028013_030 0.1031907336 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000025_770 0.1148540603 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
10 Hb_036182_010 0.116657986 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
11 Hb_001769_150 0.1180377578 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
12 Hb_061361_010 0.1189473802 - - kinase, putative [Ricinus communis]
13 Hb_000175_210 0.1314447028 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_008725_110 0.1386676642 - - PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
15 Hb_000227_020 0.1452732503 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
16 Hb_000358_010 0.1486539767 - - PREDICTED: basic blue protein [Populus euphratica]
17 Hb_010369_020 0.158169654 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
18 Hb_007044_260 0.1588846803 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
19 Hb_011063_030 0.1684192173 - - protein with unknown function [Ricinus communis]
20 Hb_002874_010 0.1690899574 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_140 Hb_006120_140 Hb_000621_100 Hb_000621_100 Hb_006120_140--Hb_000621_100 Hb_000000_040 Hb_000000_040 Hb_006120_140--Hb_000000_040 Hb_020273_020 Hb_020273_020 Hb_006120_140--Hb_020273_020 Hb_000321_040 Hb_000321_040 Hb_006120_140--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_006120_140--Hb_001890_040 Hb_005066_050 Hb_005066_050 Hb_006120_140--Hb_005066_050 Hb_000621_100--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_000621_100--Hb_000321_040 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_000621_100--Hb_005066_050 Hb_000000_040--Hb_020273_020 Hb_000000_040--Hb_005066_050 Hb_000000_040--Hb_000321_040 Hb_008725_110 Hb_008725_110 Hb_000000_040--Hb_008725_110 Hb_000175_210 Hb_000175_210 Hb_020273_020--Hb_000175_210 Hb_020273_020--Hb_000321_040 Hb_020273_020--Hb_001890_040 Hb_020273_020--Hb_000621_100 Hb_000321_040--Hb_001890_040 Hb_028013_030 Hb_028013_030 Hb_000321_040--Hb_028013_030 Hb_001890_040--Hb_028013_030 Hb_001890_040--Hb_000175_210 Hb_001890_040--Hb_000000_040 Hb_005066_050--Hb_000025_770 Hb_005066_050--Hb_061361_010 Hb_005066_050--Hb_008725_110 Hb_001205_280 Hb_001205_280 Hb_005066_050--Hb_001205_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0836061 0.0187567 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158076 0

CAGE analysis