Hb_020273_020

Information

Type -
Description -
Location Contig20273: 38788-45342
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020273_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000000_040 0.0463869393 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
3 Hb_006120_140 0.0587966205 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
4 Hb_000175_210 0.0771855888 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
5 Hb_000321_040 0.081303465 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
6 Hb_001890_040 0.083889569 - - receptor-kinase, putative [Ricinus communis]
7 Hb_000621_100 0.1032710236 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028013_030 0.1085486475 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_008725_110 0.1150433202 - - PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
10 Hb_005066_050 0.1233356636 - - -
11 Hb_001769_150 0.140222191 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
12 Hb_000227_020 0.1511084445 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
13 Hb_000025_770 0.1526434925 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_124302_010 0.1533681421 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
15 Hb_036182_010 0.1571303215 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
16 Hb_061361_010 0.1577802428 - - kinase, putative [Ricinus communis]
17 Hb_011063_030 0.1621255213 - - protein with unknown function [Ricinus communis]
18 Hb_008132_010 0.1708496299 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
19 Hb_000358_010 0.172068463 - - PREDICTED: basic blue protein [Populus euphratica]
20 Hb_001235_040 0.1735706864 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]

Gene co-expression network

sample Hb_020273_020 Hb_020273_020 Hb_000000_040 Hb_000000_040 Hb_020273_020--Hb_000000_040 Hb_006120_140 Hb_006120_140 Hb_020273_020--Hb_006120_140 Hb_000175_210 Hb_000175_210 Hb_020273_020--Hb_000175_210 Hb_000321_040 Hb_000321_040 Hb_020273_020--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_020273_020--Hb_001890_040 Hb_000621_100 Hb_000621_100 Hb_020273_020--Hb_000621_100 Hb_000000_040--Hb_006120_140 Hb_005066_050 Hb_005066_050 Hb_000000_040--Hb_005066_050 Hb_000000_040--Hb_000621_100 Hb_000000_040--Hb_000321_040 Hb_008725_110 Hb_008725_110 Hb_000000_040--Hb_008725_110 Hb_006120_140--Hb_000621_100 Hb_006120_140--Hb_000321_040 Hb_006120_140--Hb_001890_040 Hb_006120_140--Hb_005066_050 Hb_000175_210--Hb_001890_040 Hb_000175_210--Hb_000000_040 Hb_124302_010 Hb_124302_010 Hb_000175_210--Hb_124302_010 Hb_028013_030 Hb_028013_030 Hb_000175_210--Hb_028013_030 Hb_000175_210--Hb_006120_140 Hb_000321_040--Hb_000621_100 Hb_000321_040--Hb_001890_040 Hb_000321_040--Hb_028013_030 Hb_001890_040--Hb_028013_030 Hb_001890_040--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_000621_100--Hb_005066_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0392895 0.00600903 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00605553 0

CAGE analysis