Hb_006316_090

Information

Type -
Description -
Location Contig6316: 132827-142345
Sequence    

Annotation

kegg
ID rcu:RCOM_1162380
description hydrolase, hydrolyzing O-glycosyl compounds, putative (EC:3.2.1.21)
nr
ID XP_002523935.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID A7LXU3
description Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02659 PE=1 SV=1
trembl
ID B9SD66
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1162380 PE=4 SV=1
Gene Ontology
ID GO:0008422
description lysosomal beta glucosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51856: 132837-142380
cDNA
(Sanger)
(ID:Location)		 002_D08.ab1: 132846-134469 , 013_A16.ab1: 132846-134394

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006316_090 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_000358_010 0.0642152879 - - PREDICTED: basic blue protein [Populus euphratica]
3 Hb_000103_460 0.0671767056 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
4 Hb_001076_010 0.0769088479 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
5 Hb_001369_550 0.0847807861 - - 21 kDa protein precursor, putative [Ricinus communis]
6 Hb_001366_380 0.0897472248 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
7 Hb_004316_080 0.095717033 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
8 Hb_002874_010 0.0989605601 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
9 Hb_001769_150 0.101992305 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
10 Hb_007044_260 0.1075627842 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
11 Hb_000205_180 0.1133578744 - - lipoxygenase, putative [Ricinus communis]
12 Hb_080147_070 0.1167920375 - - Rop5 [Hevea brasiliensis]
13 Hb_000260_670 0.1171806653 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
14 Hb_005306_030 0.1176473156 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
15 Hb_036182_010 0.1248298635 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
16 Hb_000954_040 0.125371741 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
17 Hb_001649_050 0.1273091825 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
18 Hb_001476_030 0.1275864813 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
19 Hb_000030_080 0.1283386784 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
20 Hb_004607_020 0.1287428498 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]

Gene co-expression network

sample Hb_006316_090 Hb_006316_090 Hb_000358_010 Hb_000358_010 Hb_006316_090--Hb_000358_010 Hb_000103_460 Hb_000103_460 Hb_006316_090--Hb_000103_460 Hb_001076_010 Hb_001076_010 Hb_006316_090--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_007044_260 Hb_007044_260 Hb_000358_010--Hb_007044_260 Hb_000358_010--Hb_001076_010 Hb_002874_010 Hb_002874_010 Hb_000358_010--Hb_002874_010 Hb_001769_150 Hb_001769_150 Hb_000358_010--Hb_001769_150 Hb_000358_010--Hb_000103_460 Hb_000103_460--Hb_001076_010 Hb_000103_460--Hb_001369_550 Hb_000103_460--Hb_002874_010 Hb_005306_030 Hb_005306_030 Hb_000103_460--Hb_005306_030 Hb_001076_010--Hb_002874_010 Hb_004631_040 Hb_004631_040 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_080147_070 Hb_080147_070 Hb_001369_550--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_001369_550--Hb_000205_180 Hb_000260_670 Hb_000260_670 Hb_001369_550--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001369_550--Hb_002700_030 Hb_001284_070 Hb_001284_070 Hb_001369_550--Hb_001284_070 Hb_000272_010 Hb_000272_010 Hb_001366_380--Hb_000272_010 Hb_001366_380--Hb_000260_670 Hb_001366_380--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001366_380--Hb_001649_050 Hb_001366_380--Hb_001076_010 Hb_004607_020 Hb_004607_020 Hb_004316_080--Hb_004607_020 Hb_004316_080--Hb_001649_050 Hb_007951_020 Hb_007951_020 Hb_004316_080--Hb_007951_020 Hb_005743_010 Hb_005743_010 Hb_004316_080--Hb_005743_010 Hb_001476_030 Hb_001476_030 Hb_004316_080--Hb_001476_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017626 0.613766 25.0658 7.45093 0.00882393 0.00837681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.020015 0 0 7.09835 1.50226

CAGE analysis