Hb_007951_020

Information

Type -
Description -
Location Contig7951: 21895-23655
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15340g
description POPTRDRAFT_800060; cationic amino acid transporter 5 family protein
nr
ID XP_002303714.2
description cationic amino acid transporter 5 family protein [Populus trichocarpa]
swissprot
ID O64759
description Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1
trembl
ID B9GYF7
description Cationic amino acid transporter 5 family protein OS=Populus trichocarpa GN=POPTR_0003s15340g PE=4 SV=2
Gene Ontology
ID GO:0016021
description cationic amino acid transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58503: 21722-22508 , PASA_asmbl_58504: 22517-23163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_020 0.0 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
2 Hb_000035_150 0.0750004923 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
3 Hb_007643_060 0.0782451628 - - -
4 Hb_003626_020 0.0990907835 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
5 Hb_012691_010 0.1006130218 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
6 Hb_005743_010 0.1008893366 - - RING/U-box superfamily protein, putative [Theobroma cacao]
7 Hb_000343_010 0.1071909702 - - F3F9.11 [Arabidopsis thaliana]
8 Hb_004316_080 0.1088981135 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
9 Hb_002205_160 0.1114234406 - - chalcone isomerase [Hibiscus cannabinus]
10 Hb_003992_130 0.1162724281 - - unnamed protein product [Vitis vinifera]
11 Hb_006615_220 0.1184861133 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
12 Hb_000664_080 0.1242895646 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
13 Hb_001476_030 0.125259914 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
14 Hb_000205_180 0.1272032633 - - lipoxygenase, putative [Ricinus communis]
15 Hb_004607_020 0.1272316176 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
16 Hb_008643_220 0.1397386063 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
17 Hb_002170_060 0.1405542573 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
18 Hb_005834_050 0.1414567448 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
19 Hb_002995_010 0.1447703545 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
20 Hb_000471_030 0.1479196311 - - -

Gene co-expression network

sample Hb_007951_020 Hb_007951_020 Hb_000035_150 Hb_000035_150 Hb_007951_020--Hb_000035_150 Hb_007643_060 Hb_007643_060 Hb_007951_020--Hb_007643_060 Hb_003626_020 Hb_003626_020 Hb_007951_020--Hb_003626_020 Hb_012691_010 Hb_012691_010 Hb_007951_020--Hb_012691_010 Hb_005743_010 Hb_005743_010 Hb_007951_020--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007951_020--Hb_000343_010 Hb_000035_150--Hb_007643_060 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_006615_220 Hb_006615_220 Hb_000035_150--Hb_006615_220 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_007643_060--Hb_006615_220 Hb_007643_060--Hb_012691_010 Hb_007643_060--Hb_005743_010 Hb_007643_060--Hb_000343_010 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_003626_020--Hb_003992_130 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_001310_060 Hb_001310_060 Hb_003626_020--Hb_001310_060 Hb_006294_030 Hb_006294_030 Hb_012691_010--Hb_006294_030 Hb_000471_030 Hb_000471_030 Hb_012691_010--Hb_000471_030 Hb_005834_050 Hb_005834_050 Hb_012691_010--Hb_005834_050 Hb_012691_010--Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_005743_010--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_005743_010--Hb_006266_010 Hb_068804_070 Hb_068804_070 Hb_005743_010--Hb_068804_070 Hb_005743_010--Hb_006615_220 Hb_000343_010--Hb_006615_220 Hb_000343_010--Hb_000035_150 Hb_000343_010--Hb_004607_020 Hb_000343_010--Hb_003626_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.274462 3.50364 0.599498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.684987 0.473945

CAGE analysis