Hb_003992_130

Information

Type -
Description -
Location Contig3992: 85151-89565
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G165800g
description hypothetical protein
nr
ID CBI36327.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P80728
description Mavicyanin OS=Cucurbita pepo PE=1 SV=1
trembl
ID F6HXD5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_130 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000035_150 0.0632485114 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
3 Hb_004213_010 0.0639802266 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_001153_160 0.0678654027 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
5 Hb_003626_020 0.0818176602 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
6 Hb_027337_010 0.0901146003 - - Potassium transporter, putative [Ricinus communis]
7 Hb_108576_020 0.0942113957 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002918_220 0.1020531413 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
9 Hb_007643_060 0.1029490889 - - -
10 Hb_002170_060 0.1033849378 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
11 Hb_002205_160 0.1063331515 - - chalcone isomerase [Hibiscus cannabinus]
12 Hb_005568_140 0.1082256326 - - ATP binding protein, putative [Ricinus communis]
13 Hb_007951_020 0.1162724281 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
14 Hb_006615_220 0.1168956374 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
15 Hb_008643_220 0.1172194411 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
16 Hb_004567_070 0.1190956998 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002995_010 0.1197703822 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
18 Hb_010267_020 0.1222686506 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
19 Hb_001571_080 0.1227051968 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
20 Hb_002817_030 0.1227753379 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]

Gene co-expression network

sample Hb_003992_130 Hb_003992_130 Hb_000035_150 Hb_000035_150 Hb_003992_130--Hb_000035_150 Hb_004213_010 Hb_004213_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003626_020 Hb_003626_020 Hb_003992_130--Hb_003626_020 Hb_027337_010 Hb_027337_010 Hb_003992_130--Hb_027337_010 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020 Hb_007643_060 Hb_007643_060 Hb_000035_150--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_000035_150--Hb_007951_020 Hb_006615_220 Hb_006615_220 Hb_000035_150--Hb_006615_220 Hb_000035_150--Hb_003626_020 Hb_000035_150--Hb_004213_010 Hb_004213_010--Hb_001153_160 Hb_004213_010--Hb_108576_020 Hb_007313_030 Hb_007313_030 Hb_004213_010--Hb_007313_030 Hb_003101_020 Hb_003101_020 Hb_004213_010--Hb_003101_020 Hb_001153_160--Hb_108576_020 Hb_001153_160--Hb_000035_150 Hb_001153_160--Hb_007313_030 Hb_001153_160--Hb_003101_020 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_003626_020--Hb_027337_010 Hb_001310_060 Hb_001310_060 Hb_003626_020--Hb_001310_060 Hb_002817_030 Hb_002817_030 Hb_027337_010--Hb_002817_030 Hb_002918_220 Hb_002918_220 Hb_027337_010--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_027337_010--Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_027337_010--Hb_005568_140 Hb_108576_020--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_108576_020--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_108576_020--Hb_062807_010 Hb_108576_020--Hb_007313_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.10992 1.03777 0.293724 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11576 0.199275

CAGE analysis