Hb_002817_030

Information

Type -
Description -
Location Contig2817: 37196-37432
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39195g
description hypothetical protein
nr
ID XP_006370062.1
description hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GVK4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39195g PE=4 SV=1
Gene Ontology
ID GO:0005488
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002817_030 0.0 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
2 Hb_007237_020 0.0874918234 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
3 Hb_027337_010 0.0938122917 - - Potassium transporter, putative [Ricinus communis]
4 Hb_004117_280 0.1017151463 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
5 Hb_000914_140 0.1025051006 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
6 Hb_002311_500 0.1062771883 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
7 Hb_003573_050 0.1091315697 - - ARF GTPase activator, putative [Ricinus communis]
8 Hb_000024_150 0.1115643508 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
9 Hb_001571_080 0.1158740602 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
10 Hb_000627_040 0.1165732265 - - leucine-rich repeat protein, putative [Ricinus communis]
11 Hb_002995_010 0.1183264205 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
12 Hb_002490_060 0.1206909027 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
13 Hb_004567_070 0.1218154733 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003992_130 0.1227753379 - - unnamed protein product [Vitis vinifera]
15 Hb_002053_180 0.1231685823 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
16 Hb_000862_050 0.1248152111 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
17 Hb_000086_470 0.1248312848 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
18 Hb_000592_100 0.1273351214 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
19 Hb_000731_280 0.1280295002 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
20 Hb_000996_040 0.133088327 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]

Gene co-expression network

sample Hb_002817_030 Hb_002817_030 Hb_007237_020 Hb_007237_020 Hb_002817_030--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_002817_030--Hb_027337_010 Hb_004117_280 Hb_004117_280 Hb_002817_030--Hb_004117_280 Hb_000914_140 Hb_000914_140 Hb_002817_030--Hb_000914_140 Hb_002311_500 Hb_002311_500 Hb_002817_030--Hb_002311_500 Hb_003573_050 Hb_003573_050 Hb_002817_030--Hb_003573_050 Hb_000086_470 Hb_000086_470 Hb_007237_020--Hb_000086_470 Hb_000627_040 Hb_000627_040 Hb_007237_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_007237_020--Hb_002053_180 Hb_002490_060 Hb_002490_060 Hb_007237_020--Hb_002490_060 Hb_000120_340 Hb_000120_340 Hb_007237_020--Hb_000120_340 Hb_003992_130 Hb_003992_130 Hb_027337_010--Hb_003992_130 Hb_003626_020 Hb_003626_020 Hb_027337_010--Hb_003626_020 Hb_002918_220 Hb_002918_220 Hb_027337_010--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_027337_010--Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_027337_010--Hb_005568_140 Hb_004611_050 Hb_004611_050 Hb_004117_280--Hb_004611_050 Hb_003092_020 Hb_003092_020 Hb_004117_280--Hb_003092_020 Hb_004117_280--Hb_002490_060 Hb_004117_280--Hb_000627_040 Hb_000163_180 Hb_000163_180 Hb_004117_280--Hb_000163_180 Hb_000914_140--Hb_003573_050 Hb_001828_110 Hb_001828_110 Hb_000914_140--Hb_001828_110 Hb_000914_140--Hb_002311_500 Hb_000914_140--Hb_002053_180 Hb_003759_040 Hb_003759_040 Hb_000914_140--Hb_003759_040 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_000200_270 Hb_000200_270 Hb_002311_500--Hb_000200_270 Hb_003573_050--Hb_001828_110 Hb_000418_170 Hb_000418_170 Hb_003573_050--Hb_000418_170 Hb_003747_250 Hb_003747_250 Hb_003573_050--Hb_003747_250 Hb_003573_050--Hb_002490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.90958 23.8467 12.8296 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.47559 5.42334

CAGE analysis