Hb_002995_010

Information

Type -
Description -
Location Contig2995: 7343-9833
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06930g
description POPTRDRAFT_765579; oxidoreductase family protein
nr
ID XP_012087306.1
description PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
swissprot
ID D4N502
description Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1
trembl
ID A0A067L8J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01256 PE=3 SV=1
Gene Ontology
ID GO:0005506
description leucoanthocyanidin dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31286: 7226-7405 , PASA_asmbl_31288: 8184-10018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002995_010 0.0 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
2 Hb_005834_050 0.0712021374 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
3 Hb_002311_500 0.1004926203 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
4 Hb_001776_130 0.1095304701 - - metallothionein [Hevea brasiliensis]
5 Hb_000035_150 0.1127249968 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
6 Hb_002817_030 0.1183264205 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
7 Hb_004567_070 0.1187811515 - - conserved hypothetical protein [Ricinus communis]
8 Hb_027337_010 0.1194320475 - - Potassium transporter, putative [Ricinus communis]
9 Hb_003992_130 0.1197703822 - - unnamed protein product [Vitis vinifera]
10 Hb_010407_150 0.1205409142 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
11 Hb_011849_030 0.121152567 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009907_020 0.1230732242 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
13 Hb_003759_040 0.1235684603 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
14 Hb_001001_010 0.1259220149 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
15 Hb_000771_040 0.129639122 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
16 Hb_002205_160 0.1307519744 - - chalcone isomerase [Hibiscus cannabinus]
17 Hb_001581_040 0.1312631153 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_012691_010 0.134381442 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
19 Hb_000018_090 0.1369795334 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000914_140 0.1371412365 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002995_010 Hb_002995_010 Hb_005834_050 Hb_005834_050 Hb_002995_010--Hb_005834_050 Hb_002311_500 Hb_002311_500 Hb_002995_010--Hb_002311_500 Hb_001776_130 Hb_001776_130 Hb_002995_010--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_002995_010--Hb_000035_150 Hb_002817_030 Hb_002817_030 Hb_002995_010--Hb_002817_030 Hb_004567_070 Hb_004567_070 Hb_002995_010--Hb_004567_070 Hb_012691_010 Hb_012691_010 Hb_005834_050--Hb_012691_010 Hb_005834_050--Hb_001776_130 Hb_005834_050--Hb_000035_150 Hb_003759_040 Hb_003759_040 Hb_005834_050--Hb_003759_040 Hb_006615_220 Hb_006615_220 Hb_005834_050--Hb_006615_220 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_000200_270 Hb_000200_270 Hb_002311_500--Hb_000200_270 Hb_000018_090 Hb_000018_090 Hb_001776_130--Hb_000018_090 Hb_001776_130--Hb_003759_040 Hb_003688_220 Hb_003688_220 Hb_001776_130--Hb_003688_220 Hb_001776_130--Hb_009907_020 Hb_007643_060 Hb_007643_060 Hb_000035_150--Hb_007643_060 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_007951_020 Hb_007951_020 Hb_000035_150--Hb_007951_020 Hb_000035_150--Hb_006615_220 Hb_003626_020 Hb_003626_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_007237_020 Hb_007237_020 Hb_002817_030--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_002817_030--Hb_027337_010 Hb_004117_280 Hb_004117_280 Hb_002817_030--Hb_004117_280 Hb_000914_140 Hb_000914_140 Hb_002817_030--Hb_000914_140 Hb_002817_030--Hb_002311_500 Hb_003573_050 Hb_003573_050 Hb_002817_030--Hb_003573_050 Hb_003777_120 Hb_003777_120 Hb_004567_070--Hb_003777_120 Hb_000002_370 Hb_000002_370 Hb_004567_070--Hb_000002_370 Hb_002053_180 Hb_002053_180 Hb_004567_070--Hb_002053_180 Hb_010407_150 Hb_010407_150 Hb_004567_070--Hb_010407_150 Hb_001571_080 Hb_001571_080 Hb_004567_070--Hb_001571_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.652816 2.68535 0.767257 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.470559 0.384588

CAGE analysis