Hb_006615_220

Information

Type transcription factor
Description TF Family: bHLH
Location Contig6615: 134886-141784
Sequence    

Annotation

kegg
ID rcu:RCOM_1467110
description Transcription factor BIM1, putative
nr
ID XP_012080442.1
description PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
swissprot
ID Q9LEZ3
description Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2
trembl
ID A0A067KHS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11770 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bim1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53044: 134100-141982 , PASA_asmbl_53045: 134100-141979 , PASA_asmbl_53047: 136722-140524
cDNA
(Sanger)
(ID:Location)		 015_N20.ab1: 136722-139849 , 020_E14.ab1: 136722-140247 , 028_A22.ab1: 134100-135030

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_220 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
2 Hb_007643_060 0.0760107555 - - -
3 Hb_000035_150 0.0869035804 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
4 Hb_005743_010 0.0895330113 - - RING/U-box superfamily protein, putative [Theobroma cacao]
5 Hb_000343_010 0.0895665864 - - F3F9.11 [Arabidopsis thaliana]
6 Hb_006266_010 0.1002380635 - - unnamed protein product [Vitis vinifera]
7 Hb_001310_060 0.1068036418 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_001153_160 0.1145103434 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
9 Hb_004213_010 0.1150699767 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_004832_010 0.1155589403 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003992_130 0.1168956374 - - unnamed protein product [Vitis vinifera]
12 Hb_012691_010 0.1179924963 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
13 Hb_007951_020 0.1184861133 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
14 Hb_005834_050 0.1189944725 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
15 Hb_003592_060 0.1205662073 - - hypothetical protein F383_11017 [Gossypium arboreum]
16 Hb_004607_020 0.1257354742 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
17 Hb_003626_020 0.1257880613 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
18 Hb_007120_130 0.1289317154 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001284_070 0.1309041572 - - conserved hypothetical protein [Ricinus communis]
20 Hb_108576_020 0.1349226903 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006615_220 Hb_006615_220 Hb_007643_060 Hb_007643_060 Hb_006615_220--Hb_007643_060 Hb_000035_150 Hb_000035_150 Hb_006615_220--Hb_000035_150 Hb_005743_010 Hb_005743_010 Hb_006615_220--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_006615_220--Hb_000343_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_007643_060--Hb_000035_150 Hb_007951_020 Hb_007951_020 Hb_007643_060--Hb_007951_020 Hb_012691_010 Hb_012691_010 Hb_007643_060--Hb_012691_010 Hb_007643_060--Hb_005743_010 Hb_007643_060--Hb_000343_010 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_000035_150--Hb_007951_020 Hb_003626_020 Hb_003626_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_003592_060 Hb_003592_060 Hb_005743_010--Hb_003592_060 Hb_005743_010--Hb_006266_010 Hb_068804_070 Hb_068804_070 Hb_005743_010--Hb_068804_070 Hb_005743_010--Hb_007951_020 Hb_000343_010--Hb_000035_150 Hb_000343_010--Hb_007951_020 Hb_004607_020 Hb_004607_020 Hb_000343_010--Hb_004607_020 Hb_000343_010--Hb_003626_020 Hb_006266_010--Hb_003592_060 Hb_009693_010 Hb_009693_010 Hb_006266_010--Hb_009693_010 Hb_137272_010 Hb_137272_010 Hb_006266_010--Hb_137272_010 Hb_006266_010--Hb_068804_070 Hb_001284_070 Hb_001284_070 Hb_001310_060--Hb_001284_070 Hb_080147_070 Hb_080147_070 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_004607_020 Hb_000205_180 Hb_000205_180 Hb_001310_060--Hb_000205_180 Hb_002700_030 Hb_002700_030 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0421612 2.10608 17.8418 4.7369 0.0394721 0.020407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0565655 0 4.36064 5.05238

CAGE analysis