Hb_002700_030

Information

Type -
Description -
Location Contig2700: 62950-67303
Sequence    

Annotation

kegg
ID rcu:RCOM_1553860
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_012072731.1
description PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID A0A067KNI6
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_06344 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28293: 63027-65457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002700_030 0.0 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
2 Hb_000077_300 0.0545658882 - - PREDICTED: expansin-B3-like [Jatropha curcas]
3 Hb_080147_070 0.0674880162 - - Rop5 [Hevea brasiliensis]
4 Hb_001284_070 0.07960312 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002757_010 0.0808401541 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
6 Hb_001310_060 0.0827052628 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_003902_070 0.0891647763 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000260_670 0.0902820818 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
9 Hb_001454_270 0.090789929 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
10 Hb_004607_020 0.0909643306 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
11 Hb_000205_180 0.0930115142 - - lipoxygenase, putative [Ricinus communis]
12 Hb_001369_550 0.0947202555 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_000030_080 0.0969544967 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
14 Hb_003626_020 0.1005600035 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
15 Hb_000359_180 0.1039735325 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000954_040 0.1094284036 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
17 Hb_001263_030 0.109739933 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
18 Hb_003106_090 0.1111355203 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_005542_150 0.1119094647 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
20 Hb_001999_160 0.113654237 - - hypothetical protein JCGZ_08488 [Jatropha curcas]

Gene co-expression network

sample Hb_002700_030 Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_002700_030--Hb_000077_300 Hb_080147_070 Hb_080147_070 Hb_002700_030--Hb_080147_070 Hb_001284_070 Hb_001284_070 Hb_002700_030--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_001310_060 Hb_001310_060 Hb_002700_030--Hb_001310_060 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_000077_300--Hb_002757_010 Hb_000077_300--Hb_003902_070 Hb_000077_300--Hb_001310_060 Hb_000077_300--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_000077_300--Hb_000205_180 Hb_080147_070--Hb_001284_070 Hb_000260_670 Hb_000260_670 Hb_080147_070--Hb_000260_670 Hb_001369_550 Hb_001369_550 Hb_080147_070--Hb_001369_550 Hb_080147_070--Hb_001310_060 Hb_004607_020 Hb_004607_020 Hb_080147_070--Hb_004607_020 Hb_001284_070--Hb_001310_060 Hb_001284_070--Hb_004607_020 Hb_001284_070--Hb_000205_180 Hb_001284_070--Hb_001369_550 Hb_002757_010--Hb_003902_070 Hb_002757_010--Hb_000205_180 Hb_062807_010 Hb_062807_010 Hb_002757_010--Hb_062807_010 Hb_005116_120 Hb_005116_120 Hb_002757_010--Hb_005116_120 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_000205_180 Hb_000030_080 Hb_000030_080 Hb_003902_070--Hb_000030_080 Hb_004592_030 Hb_004592_030 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_001454_270 Hb_001454_270 Hb_003902_070--Hb_001454_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0120893 0.408211 10.4381 5.22127 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0216461 0 2.55389 1.7283

CAGE analysis